miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 56075 0.71 0.206972
Target:  5'- gGGCCuGGCaGCCGAGcACCGGCaCCC-Cg -3'
miRNA:   3'- gCCGG-CUG-CGGUUC-UGGCCGcGGGuG- -5'
18506 3' -63.2 NC_004681.1 + 25779 0.7 0.217388
Target:  5'- aGGCCGACGCCu-GGCCc-CGCCCc- -3'
miRNA:   3'- gCCGGCUGCGGuuCUGGccGCGGGug -5'
18506 3' -63.2 NC_004681.1 + 65888 0.7 0.217388
Target:  5'- gCGGCCGAgGCCGAGA-CGGaCGaacuCCGCc -3'
miRNA:   3'- -GCCGGCUgCGGUUCUgGCC-GCg---GGUG- -5'
18506 3' -63.2 NC_004681.1 + 61741 0.7 0.22222
Target:  5'- aGGCCGcccucgcGCGCCAccAGACCG-CGgCCGCc -3'
miRNA:   3'- gCCGGC-------UGCGGU--UCUGGCcGCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 9088 0.7 0.222763
Target:  5'- uGGCCG-CGUCGucACCGGCGCCg-- -3'
miRNA:   3'- gCCGGCuGCGGUucUGGCCGCGGgug -5'
18506 3' -63.2 NC_004681.1 + 14400 0.7 0.222763
Target:  5'- -cGCCGACGCCAAGcGCaagcaGGCGgCCGa -3'
miRNA:   3'- gcCGGCUGCGGUUC-UGg----CCGCgGGUg -5'
18506 3' -63.2 NC_004681.1 + 17288 0.7 0.233851
Target:  5'- cCGGagaCGACGCCcugcuGGCgCGcGUGCCCGCg -3'
miRNA:   3'- -GCCg--GCUGCGGuu---CUG-GC-CGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 58738 0.7 0.239567
Target:  5'- gCGGCCGugGCgCAGGACaccuugaGGgGCCgAg -3'
miRNA:   3'- -GCCGGCugCG-GUUCUGg------CCgCGGgUg -5'
18506 3' -63.2 NC_004681.1 + 17943 0.7 0.245399
Target:  5'- -cGCCGggGCGCCcggguugguGAGGCCGGUGCCUugcGCg -3'
miRNA:   3'- gcCGGC--UGCGG---------UUCUGGCCGCGGG---UG- -5'
18506 3' -63.2 NC_004681.1 + 51874 0.7 0.245399
Target:  5'- gCGGCCuuggagauGAUGUUcAGACCGGCguuacucuuGCCCGCg -3'
miRNA:   3'- -GCCGG--------CUGCGGuUCUGGCCG---------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 58984 0.69 0.257417
Target:  5'- aGGCCGcccaggUGCUcgAAGACCucgugggggagGGCGCCCACc -3'
miRNA:   3'- gCCGGCu-----GCGG--UUCUGG-----------CCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 12094 0.69 0.263604
Target:  5'- uCGGCUugGugGCCuuguAGccAgCGGUGCCCACg -3'
miRNA:   3'- -GCCGG--CugCGGu---UC--UgGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 44483 0.69 0.269912
Target:  5'- aGGgUGAguUGCCcGGACgGGCGCCCGu -3'
miRNA:   3'- gCCgGCU--GCGGuUCUGgCCGCGGGUg -5'
18506 3' -63.2 NC_004681.1 + 7213 0.69 0.269912
Target:  5'- gCGGCCGGUGCCGGuaaCGGCGacaCCGCg -3'
miRNA:   3'- -GCCGGCUGCGGUUcugGCCGCg--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 2294 0.69 0.269912
Target:  5'- gCGGCuacacccuCGAUGacaucgaaugcaCCGAGGUCGGCGCCCACu -3'
miRNA:   3'- -GCCG--------GCUGC------------GGUUCUGGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 6483 0.69 0.270549
Target:  5'- gGGCCuccucccccucgacaGCGCCAucGGGCgUGGCGCCCAa -3'
miRNA:   3'- gCCGGc--------------UGCGGU--UCUG-GCCGCGGGUg -5'
18506 3' -63.2 NC_004681.1 + 16496 0.69 0.272469
Target:  5'- uGGCCuggucacccuuggagGugGCCGAGGCaacccacuUGGCGCCCuCg -3'
miRNA:   3'- gCCGG---------------CugCGGUUCUG--------GCCGCGGGuG- -5'
18506 3' -63.2 NC_004681.1 + 56209 0.69 0.27634
Target:  5'- uGaGUCgGugGCCuGGACCGGCGUCgACc -3'
miRNA:   3'- gC-CGG-CugCGGuUCUGGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 18737 0.69 0.282891
Target:  5'- gGGCgaCGGCGgCGAGGCCGcGCGUgacaCCGCa -3'
miRNA:   3'- gCCG--GCUGCgGUUCUGGC-CGCG----GGUG- -5'
18506 3' -63.2 NC_004681.1 + 65130 0.69 0.282891
Target:  5'- aCGGCCGccacaacuaccGCGUCu---CCGGUGUCCGCg -3'
miRNA:   3'- -GCCGGC-----------UGCGGuucuGGCCGCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.