miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 22491 0.69 0.282891
Target:  5'- gCGGCCGGgGU---GACCaGCGUCCACu -3'
miRNA:   3'- -GCCGGCUgCGguuCUGGcCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 18737 0.69 0.282891
Target:  5'- gGGCgaCGGCGgCGAGGCCGcGCGUgacaCCGCa -3'
miRNA:   3'- gCCG--GCUGCgGUUCUGGC-CGCG----GGUG- -5'
18506 3' -63.2 NC_004681.1 + 38799 0.69 0.282891
Target:  5'- gGGCCGcgcgcaagucCGCCGAGACCauccGgGCCUACg -3'
miRNA:   3'- gCCGGCu---------GCGGUUCUGGc---CgCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 65130 0.69 0.282891
Target:  5'- aCGGCCGccacaacuaccGCGUCu---CCGGUGUCCGCg -3'
miRNA:   3'- -GCCGGC-----------UGCGGuucuGGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 40459 0.68 0.289563
Target:  5'- gCGGCCGAugacauugaaCGCCGcGGCCGaCGCcgCCACg -3'
miRNA:   3'- -GCCGGCU----------GCGGUuCUGGCcGCG--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 8911 0.68 0.289563
Target:  5'- uGGCUGGCGgCGGGuaccCCGGCGUCaACg -3'
miRNA:   3'- gCCGGCUGCgGUUCu---GGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 39633 0.68 0.289563
Target:  5'- gCGGUCGAucugaCGCCGGGAUUGccaGCCCGCu -3'
miRNA:   3'- -GCCGGCU-----GCGGUUCUGGCcg-CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 32116 0.68 0.296359
Target:  5'- cCGGCCG-UGCCGAcACCcgcGGCGCCgAUc -3'
miRNA:   3'- -GCCGGCuGCGGUUcUGG---CCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 17824 0.68 0.303278
Target:  5'- gCGGCCG-CGCaAGGcACCGGC-CUCACc -3'
miRNA:   3'- -GCCGGCuGCGgUUC-UGGCCGcGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 16633 0.68 0.303278
Target:  5'- aCGGCCGcCGUgGGGACCGuuGCCgcCACc -3'
miRNA:   3'- -GCCGGCuGCGgUUCUGGCcgCGG--GUG- -5'
18506 3' -63.2 NC_004681.1 + 15380 0.68 0.31032
Target:  5'- -cGCCGACGCCAuccAGAaCGGCacccuGUCCGCc -3'
miRNA:   3'- gcCGGCUGCGGU---UCUgGCCG-----CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 10266 0.68 0.31032
Target:  5'- aGGCCGGuCGUgucgaagaUGAGGCCGGUGUCgCGCu -3'
miRNA:   3'- gCCGGCU-GCG--------GUUCUGGCCGCGG-GUG- -5'
18506 3' -63.2 NC_004681.1 + 50079 0.68 0.317486
Target:  5'- gGGUCGACGuCCAGGACUacaaGGaCGgCUACa -3'
miRNA:   3'- gCCGGCUGC-GGUUCUGG----CC-GCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 32136 0.68 0.317486
Target:  5'- gCGGCCcACGCCAAcGACCaGCuggaCCGCg -3'
miRNA:   3'- -GCCGGcUGCGGUU-CUGGcCGcg--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 24053 0.68 0.320387
Target:  5'- aGGUCGGCGaacguguuggcacgcCCGAu-CCGGCGCCgCGCa -3'
miRNA:   3'- gCCGGCUGC---------------GGUUcuGGCCGCGG-GUG- -5'
18506 3' -63.2 NC_004681.1 + 70933 0.68 0.331443
Target:  5'- gCGGCCGcugaGCGUgGAGACCgugacacGGUGCgCGCu -3'
miRNA:   3'- -GCCGGC----UGCGgUUCUGG-------CCGCGgGUG- -5'
18506 3' -63.2 NC_004681.1 + 30166 0.68 0.33219
Target:  5'- gCGGCCGcggaguggaccuACGCCAAGAacccugaCGGCaCCgACa -3'
miRNA:   3'- -GCCGGC------------UGCGGUUCUg------GCCGcGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 63538 0.68 0.33219
Target:  5'- cCGGCCGAgGCUggAAGcCUGGUGgCCAg -3'
miRNA:   3'- -GCCGGCUgCGG--UUCuGGCCGCgGGUg -5'
18506 3' -63.2 NC_004681.1 + 55995 0.68 0.33219
Target:  5'- aGGCCcucacgcagcgcGACGCCAAGGagGGCGaccuCCGCa -3'
miRNA:   3'- gCCGG------------CUGCGGUUCUggCCGCg---GGUG- -5'
18506 3' -63.2 NC_004681.1 + 40062 0.67 0.337453
Target:  5'- aGGCCGACGCCAgcacccagaucgacAGGCUGGagaUCAUg -3'
miRNA:   3'- gCCGGCUGCGGU--------------UCUGGCCgcgGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.