Results 101 - 109 of 109 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 18506 | 3' | -63.2 | NC_004681.1 | + | 32414 | 0.66 | 0.421737 |
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Target: 5'- uGGCgGaccuugacgaaGCGCCAAGGCUGGgGgUCGCc -3' miRNA: 3'- gCCGgC-----------UGCGGUUCUGGCCgCgGGUG- -5' |
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| 18506 | 3' | -63.2 | NC_004681.1 | + | 18364 | 0.66 | 0.421737 |
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Target: 5'- cCGG-UGGCGCCAucgacauggcAGGCCaggcGGCGgCCGCg -3' miRNA: 3'- -GCCgGCUGCGGU----------UCUGG----CCGCgGGUG- -5' |
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| 18506 | 3' | -63.2 | NC_004681.1 | + | 40386 | 0.66 | 0.421737 |
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Target: 5'- gCGGCac-CGCCAGcguGGCCGGUGUcuCCACc -3' miRNA: 3'- -GCCGgcuGCGGUU---CUGGCCGCG--GGUG- -5' |
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| 18506 | 3' | -63.2 | NC_004681.1 | + | 2955 | 0.66 | 0.429685 |
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Target: 5'- aCGGUCGAgCGCCucggGGACggugaccguguagCGGCGgucCCCGCg -3' miRNA: 3'- -GCCGGCU-GCGGu---UCUG-------------GCCGC---GGGUG- -5' |
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| 18506 | 3' | -63.2 | NC_004681.1 | + | 35396 | 0.66 | 0.430574 |
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Target: 5'- uGGCCGGauuCCucGACgGGCaCCCACu -3' miRNA: 3'- gCCGGCUgc-GGuuCUGgCCGcGGGUG- -5' |
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| 18506 | 3' | -63.2 | NC_004681.1 | + | 15940 | 0.66 | 0.430574 |
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Target: 5'- aGaGCCuuCGUCAGGGuCUGGUGCUCACc -3' miRNA: 3'- gC-CGGcuGCGGUUCU-GGCCGCGGGUG- -5' |
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| 18506 | 3' | -63.2 | NC_004681.1 | + | 50323 | 0.66 | 0.430574 |
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Target: 5'- -aGCCGaggGCGCCAuuGGAgCUGGCGaCCACc -3' miRNA: 3'- gcCGGC---UGCGGU--UCU-GGCCGCgGGUG- -5' |
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| 18506 | 3' | -63.2 | NC_004681.1 | + | 42518 | 0.66 | 0.430574 |
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Target: 5'- aGGCUGcGCGCCGacgAGACgGGgGCgCCGu -3' miRNA: 3'- gCCGGC-UGCGGU---UCUGgCCgCG-GGUg -5' |
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| 18506 | 3' | -63.2 | NC_004681.1 | + | 25301 | 0.66 | 0.430574 |
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Target: 5'- gCGGUCGcCGCCGuuGCCaGCGCCg-- -3' miRNA: 3'- -GCCGGCuGCGGUucUGGcCGCGGgug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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