miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 65967 0.66 0.404398
Target:  5'- aCGGCaCGAagGCCGAGAa-GGCuGCCgCGCa -3'
miRNA:   3'- -GCCG-GCUg-CGGUUCUggCCG-CGG-GUG- -5'
18506 3' -63.2 NC_004681.1 + 14572 0.66 0.395898
Target:  5'- aCGGCCGcaguCGCCuucGGcACCGGCaaGCUgGCu -3'
miRNA:   3'- -GCCGGCu---GCGGu--UC-UGGCCG--CGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 41056 0.66 0.395898
Target:  5'- aCGGCCcucuucGGCGCCGccGCCGauGUGCUCACc -3'
miRNA:   3'- -GCCGG------CUGCGGUucUGGC--CGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 27055 0.66 0.390854
Target:  5'- uGGUCGGCGUCGAGGgaccuacaaccaacuCCGGUcuuggcaccGUCCACu -3'
miRNA:   3'- gCCGGCUGCGGUUCU---------------GGCCG---------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 33475 0.66 0.387515
Target:  5'- uGGCCGugGCUGAucCUGGUGgCCGu -3'
miRNA:   3'- gCCGGCugCGGUUcuGGCCGCgGGUg -5'
18506 3' -63.2 NC_004681.1 + 5204 0.66 0.387515
Target:  5'- uGGCCGAgcuguCGCCAcagaugcaGGACUccuacuacuacGCGCCCGCu -3'
miRNA:   3'- gCCGGCU-----GCGGU--------UCUGGc----------CGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 22821 0.66 0.386683
Target:  5'- gCGGCCG-UGCCGguguucuGGGUCuGUGCCCACa -3'
miRNA:   3'- -GCCGGCuGCGGU-------UCUGGcCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 30645 0.67 0.379249
Target:  5'- uCGGUgGugGCaccuucGGACUGGCGuCCCGg -3'
miRNA:   3'- -GCCGgCugCGgu----UCUGGCCGC-GGGUg -5'
18506 3' -63.2 NC_004681.1 + 46605 0.67 0.379249
Target:  5'- cCGGCCcacuCGCCGAGGaccccgccCCGcacaCGCCCACu -3'
miRNA:   3'- -GCCGGcu--GCGGUUCU--------GGCc---GCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 17562 0.67 0.371102
Target:  5'- aGGCaCGAaGCCAuGAUCGGUGagCCACu -3'
miRNA:   3'- gCCG-GCUgCGGUuCUGGCCGCg-GGUG- -5'
18506 3' -63.2 NC_004681.1 + 65029 0.67 0.371102
Target:  5'- aGGCgCGuCGCCAccucgugcuccAGGCgGGCGCCgCGg -3'
miRNA:   3'- gCCG-GCuGCGGU-----------UCUGgCCGCGG-GUg -5'
18506 3' -63.2 NC_004681.1 + 14472 0.67 0.366272
Target:  5'- gCGcGCCGccucCGCCGAGcagggcgcgcuggugGCCGGUGCUgGCg -3'
miRNA:   3'- -GC-CGGCu---GCGGUUC---------------UGGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 42241 0.67 0.363076
Target:  5'- aCGGCC---GCCGAGcuGCUGGUcccGCCCGCg -3'
miRNA:   3'- -GCCGGcugCGGUUC--UGGCCG---CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 9603 0.67 0.363076
Target:  5'- aGGCCGAgGCgCucu-UCGGCGCgCACg -3'
miRNA:   3'- gCCGGCUgCG-GuucuGGCCGCGgGUG- -5'
18506 3' -63.2 NC_004681.1 + 18478 0.67 0.363076
Target:  5'- gCGGCCGcCGCCu-GGCCugccaugucgauGGCGCCa-- -3'
miRNA:   3'- -GCCGGCuGCGGuuCUGG------------CCGCGGgug -5'
18506 3' -63.2 NC_004681.1 + 12065 0.67 0.358318
Target:  5'- aCGGCCGcAUGgaCGAGGCCGaGUacguggccgagguccGCCCGCg -3'
miRNA:   3'- -GCCGGC-UGCg-GUUCUGGC-CG---------------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 64591 0.67 0.355171
Target:  5'- aGGugaCCGGCGaCCAggaauGGACCGGCGaaCGCa -3'
miRNA:   3'- gCC---GGCUGC-GGU-----UCUGGCCGCggGUG- -5'
18506 3' -63.2 NC_004681.1 + 40152 0.67 0.355171
Target:  5'- aGGCCgcGACGCCGcAGAUCgaGGCGaugagauagaCCCGCg -3'
miRNA:   3'- gCCGG--CUGCGGU-UCUGG--CCGC----------GGGUG- -5'
18506 3' -63.2 NC_004681.1 + 50369 0.67 0.355171
Target:  5'- gGGaCGugGUCGAGGgCGGCuaCCGCu -3'
miRNA:   3'- gCCgGCugCGGUUCUgGCCGcgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 11776 0.67 0.355171
Target:  5'- uGGCCGcuuCuaCGAGAUCGGUGCCauCACc -3'
miRNA:   3'- gCCGGCu--GcgGUUCUGGCCGCGG--GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.