Results 81 - 100 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 51874 | 0.7 | 0.245399 |
Target: 5'- gCGGCCuuggagauGAUGUUcAGACCGGCguuacucuuGCCCGCg -3' miRNA: 3'- -GCCGG--------CUGCGGuUCUGGCCG---------CGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 58738 | 0.7 | 0.239567 |
Target: 5'- gCGGCCGugGCgCAGGACaccuugaGGgGCCgAg -3' miRNA: 3'- -GCCGGCugCG-GUUCUGg------CCgCGGgUg -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 17288 | 0.7 | 0.233851 |
Target: 5'- cCGGagaCGACGCCcugcuGGCgCGcGUGCCCGCg -3' miRNA: 3'- -GCCg--GCUGCGGuu---CUG-GC-CGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 9088 | 0.7 | 0.222763 |
Target: 5'- uGGCCG-CGUCGucACCGGCGCCg-- -3' miRNA: 3'- gCCGGCuGCGGUucUGGCCGCGGgug -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 14400 | 0.7 | 0.222763 |
Target: 5'- -cGCCGACGCCAAGcGCaagcaGGCGgCCGa -3' miRNA: 3'- gcCGGCUGCGGUUC-UGg----CCGCgGGUg -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 61741 | 0.7 | 0.22222 |
Target: 5'- aGGCCGcccucgcGCGCCAccAGACCG-CGgCCGCc -3' miRNA: 3'- gCCGGC-------UGCGGU--UCUGGCcGCgGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 25779 | 0.7 | 0.217388 |
Target: 5'- aGGCCGACGCCu-GGCCc-CGCCCc- -3' miRNA: 3'- gCCGGCUGCGGuuCUGGccGCGGGug -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 65888 | 0.7 | 0.217388 |
Target: 5'- gCGGCCGAgGCCGAGA-CGGaCGaacuCCGCc -3' miRNA: 3'- -GCCGGCUgCGGUUCUgGCC-GCg---GGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 56075 | 0.71 | 0.206972 |
Target: 5'- gGGCCuGGCaGCCGAGcACCGGCaCCC-Cg -3' miRNA: 3'- gCCGG-CUG-CGGUUC-UGGCCGcGGGuG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 10654 | 0.71 | 0.206972 |
Target: 5'- -uGCCuGGCGCCc---CCGGUGCCCGCg -3' miRNA: 3'- gcCGG-CUGCGGuucuGGCCGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 14896 | 0.71 | 0.201927 |
Target: 5'- gGGCCagcugGGCGCCAGccuucaggauGGCCagGGCGUCCGCg -3' miRNA: 3'- gCCGG-----CUGCGGUU----------CUGG--CCGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 24191 | 0.71 | 0.192158 |
Target: 5'- aGGCUGGCGCCGGaACCuuGCugGCCCACg -3' miRNA: 3'- gCCGGCUGCGGUUcUGGc-CG--CGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 8239 | 0.71 | 0.18743 |
Target: 5'- aGGCCGAgGUCGAGGCgcaCGaGCGCgCGCa -3' miRNA: 3'- gCCGGCUgCGGUUCUG---GC-CGCGgGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 24925 | 0.72 | 0.173421 |
Target: 5'- -cGCCGACGCCGAugaggucGACCGcGUugGCCCAUg -3' miRNA: 3'- gcCGGCUGCGGUU-------CUGGC-CG--CGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 18202 | 0.72 | 0.169532 |
Target: 5'- uGGCCGgggGCGCCGAuGCCGGggaugccgaUGCCCAUa -3' miRNA: 3'- gCCGGC---UGCGGUUcUGGCC---------GCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 22396 | 0.72 | 0.165303 |
Target: 5'- gGGCUcacccuGCGCCAugacGGGCagGGCGCCCACg -3' miRNA: 3'- gCCGGc-----UGCGGU----UCUGg-CCGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 45097 | 0.73 | 0.14932 |
Target: 5'- gCGGUCu-CGCuCAAGACCGGgGCCgACg -3' miRNA: 3'- -GCCGGcuGCG-GUUCUGGCCgCGGgUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 40076 | 0.73 | 0.14555 |
Target: 5'- aGGCCGA-GCCGGugaguuGAcCCGGCGCCgACg -3' miRNA: 3'- gCCGGCUgCGGUU------CU-GGCCGCGGgUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 54860 | 0.73 | 0.145177 |
Target: 5'- cCGGCUGACGCCAAGGacgaccgCGGCaacagcuGCCCGa -3' miRNA: 3'- -GCCGGCUGCGGUUCUg------GCCG-------CGGGUg -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 45696 | 0.73 | 0.139698 |
Target: 5'- uGGCCGACGCgGAGgaggcACCGGCcaccuugcgggcgauGUCCACc -3' miRNA: 3'- gCCGGCUGCGgUUC-----UGGCCG---------------CGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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