miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 426 0.66 0.412145
Target:  5'- cCGGUgGACGaCgAGGGCCuccgcugGGCGUCCAa -3'
miRNA:   3'- -GCCGgCUGC-GgUUCUGG-------CCGCGGGUg -5'
18506 3' -63.2 NC_004681.1 + 994 0.75 0.106652
Target:  5'- aGGCgGACGCCAGGG-CGGCuuCCCGCu -3'
miRNA:   3'- gCCGgCUGCGGUUCUgGCCGc-GGGUG- -5'
18506 3' -63.2 NC_004681.1 + 2294 0.69 0.269912
Target:  5'- gCGGCuacacccuCGAUGacaucgaaugcaCCGAGGUCGGCGCCCACu -3'
miRNA:   3'- -GCCG--------GCUGC------------GGUUCUGGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 2955 0.66 0.429685
Target:  5'- aCGGUCGAgCGCCucggGGACggugaccguguagCGGCGgucCCCGCg -3'
miRNA:   3'- -GCCGGCU-GCGGu---UCUG-------------GCCGC---GGGUG- -5'
18506 3' -63.2 NC_004681.1 + 5204 0.66 0.387515
Target:  5'- uGGCCGAgcuguCGCCAcagaugcaGGACUccuacuacuacGCGCCCGCu -3'
miRNA:   3'- gCCGGCU-----GCGGU--------UCUGGc----------CGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 6403 0.67 0.339727
Target:  5'- aGGCCccGGCGCCGAagcGACCGGC-CagCACu -3'
miRNA:   3'- gCCGG--CUGCGGUU---CUGGCCGcGg-GUG- -5'
18506 3' -63.2 NC_004681.1 + 6483 0.69 0.270549
Target:  5'- gGGCCuccucccccucgacaGCGCCAucGGGCgUGGCGCCCAa -3'
miRNA:   3'- gCCGGc--------------UGCGGU--UCUG-GCCGCGGGUg -5'
18506 3' -63.2 NC_004681.1 + 7213 0.69 0.269912
Target:  5'- gCGGCCGGUGCCGGuaaCGGCGacaCCGCg -3'
miRNA:   3'- -GCCGGCUGCGGUUcugGCCGCg--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 7264 0.75 0.096013
Target:  5'- gCGGCCGuccaccucgGCGCCGAGugCGcCGCCUGCg -3'
miRNA:   3'- -GCCGGC---------UGCGGUUCugGCcGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 7498 0.74 0.112378
Target:  5'- cCGGUCGAUGCCuGGGCCugGGUGCgCGCg -3'
miRNA:   3'- -GCCGGCUGCGGuUCUGG--CCGCGgGUG- -5'
18506 3' -63.2 NC_004681.1 + 7826 0.66 0.404398
Target:  5'- aGGCCGgaACGCCAcaAGAuucaaCCGaagaauCGCCCGCu -3'
miRNA:   3'- gCCGGC--UGCGGU--UCU-----GGCc-----GCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 8239 0.71 0.18743
Target:  5'- aGGCCGAgGUCGAGGCgcaCGaGCGCgCGCa -3'
miRNA:   3'- gCCGGCUgCGGUUCUG---GC-CGCGgGUG- -5'
18506 3' -63.2 NC_004681.1 + 8623 0.66 0.404398
Target:  5'- uGGCCGAUgGCCGcgGGGgCGGUcucaccGUCCGCg -3'
miRNA:   3'- gCCGGCUG-CGGU--UCUgGCCG------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 8911 0.68 0.289563
Target:  5'- uGGCUGGCGgCGGGuaccCCGGCGUCaACg -3'
miRNA:   3'- gCCGGCUGCgGUUCu---GGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 9088 0.7 0.222763
Target:  5'- uGGCCG-CGUCGucACCGGCGCCg-- -3'
miRNA:   3'- gCCGGCuGCGGUucUGGCCGCGGgug -5'
18506 3' -63.2 NC_004681.1 + 9603 0.67 0.363076
Target:  5'- aGGCCGAgGCgCucu-UCGGCGCgCACg -3'
miRNA:   3'- gCCGGCUgCG-GuucuGGCCGCGgGUG- -5'
18506 3' -63.2 NC_004681.1 + 10266 0.68 0.31032
Target:  5'- aGGCCGGuCGUgucgaagaUGAGGCCGGUGUCgCGCu -3'
miRNA:   3'- gCCGGCU-GCG--------GUUCUGGCCGCGG-GUG- -5'
18506 3' -63.2 NC_004681.1 + 10310 0.67 0.347388
Target:  5'- gGaGCCaGgGCCAGGugugGCCGGUGCuCCACu -3'
miRNA:   3'- gC-CGGcUgCGGUUC----UGGCCGCG-GGUG- -5'
18506 3' -63.2 NC_004681.1 + 10654 0.71 0.206972
Target:  5'- -uGCCuGGCGCCc---CCGGUGCCCGCg -3'
miRNA:   3'- gcCGG-CUGCGGuucuGGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 11776 0.67 0.355171
Target:  5'- uGGCCGcuuCuaCGAGAUCGGUGCCauCACc -3'
miRNA:   3'- gCCGGCu--GcgGUUCUGGCCGCGG--GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.