miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 11840 0.66 0.404398
Target:  5'- aCGGaCGACaCCAAGAUuuggcagucgCGGCGCgCGCa -3'
miRNA:   3'- -GCCgGCUGcGGUUCUG----------GCCGCGgGUG- -5'
18506 3' -63.2 NC_004681.1 + 12065 0.67 0.358318
Target:  5'- aCGGCCGcAUGgaCGAGGCCGaGUacguggccgagguccGCCCGCg -3'
miRNA:   3'- -GCCGGC-UGCg-GUUCUGGC-CG---------------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 12094 0.69 0.263604
Target:  5'- uCGGCUugGugGCCuuguAGccAgCGGUGCCCACg -3'
miRNA:   3'- -GCCGG--CugCGGu---UC--UgGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 14400 0.7 0.222763
Target:  5'- -cGCCGACGCCAAGcGCaagcaGGCGgCCGa -3'
miRNA:   3'- gcCGGCUGCGGUUC-UGg----CCGCgGGUg -5'
18506 3' -63.2 NC_004681.1 + 14472 0.67 0.366272
Target:  5'- gCGcGCCGccucCGCCGAGcagggcgcgcuggugGCCGGUGCUgGCg -3'
miRNA:   3'- -GC-CGGCu---GCGGUUC---------------UGGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 14572 0.66 0.395898
Target:  5'- aCGGCCGcaguCGCCuucGGcACCGGCaaGCUgGCu -3'
miRNA:   3'- -GCCGGCu---GCGGu--UC-UGGCCG--CGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 14778 0.75 0.10948
Target:  5'- -cGCgGACGCCcuggccauccugAAGGCUGGCGCCCAg -3'
miRNA:   3'- gcCGgCUGCGG------------UUCUGGCCGCGGGUg -5'
18506 3' -63.2 NC_004681.1 + 14896 0.71 0.201927
Target:  5'- gGGCCagcugGGCGCCAGccuucaggauGGCCagGGCGUCCGCg -3'
miRNA:   3'- gCCGG-----CUGCGGUU----------CUGG--CCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 15380 0.68 0.31032
Target:  5'- -cGCCGACGCCAuccAGAaCGGCacccuGUCCGCc -3'
miRNA:   3'- gcCGGCUGCGGU---UCUgGCCG-----CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 15940 0.66 0.430574
Target:  5'- aGaGCCuuCGUCAGGGuCUGGUGCUCACc -3'
miRNA:   3'- gC-CGGcuGCGGUUCU-GGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 16143 0.67 0.347388
Target:  5'- gCGGCgGAUGCgGuGACagcggCGGCGCCCu- -3'
miRNA:   3'- -GCCGgCUGCGgUuCUG-----GCCGCGGGug -5'
18506 3' -63.2 NC_004681.1 + 16179 0.66 0.421737
Target:  5'- gCGGUggUGACGCCAccgAGGgCGGCaGUCUGCg -3'
miRNA:   3'- -GCCG--GCUGCGGU---UCUgGCCG-CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 16496 0.69 0.272469
Target:  5'- uGGCCuggucacccuuggagGugGCCGAGGCaacccacuUGGCGCCCuCg -3'
miRNA:   3'- gCCGG---------------CugCGGUUCUG--------GCCGCGGGuG- -5'
18506 3' -63.2 NC_004681.1 + 16578 0.66 0.412145
Target:  5'- gGGCgCGGCGCCGaguaguccgugggGGGCUGGaaCGCcaCCACg -3'
miRNA:   3'- gCCG-GCUGCGGU-------------UCUGGCC--GCG--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 16633 0.68 0.303278
Target:  5'- aCGGCCGcCGUgGGGACCGuuGCCgcCACc -3'
miRNA:   3'- -GCCGGCuGCGgUUCUGGCcgCGG--GUG- -5'
18506 3' -63.2 NC_004681.1 + 17288 0.7 0.233851
Target:  5'- cCGGagaCGACGCCcugcuGGCgCGcGUGCCCGCg -3'
miRNA:   3'- -GCCg--GCUGCGGuu---CUG-GC-CGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 17562 0.67 0.371102
Target:  5'- aGGCaCGAaGCCAuGAUCGGUGagCCACu -3'
miRNA:   3'- gCCG-GCUgCGGUuCUGGCCGCg-GGUG- -5'
18506 3' -63.2 NC_004681.1 + 17824 0.68 0.303278
Target:  5'- gCGGCCG-CGCaAGGcACCGGC-CUCACc -3'
miRNA:   3'- -GCCGGCuGCGgUUC-UGGCCGcGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 17943 0.7 0.245399
Target:  5'- -cGCCGggGCGCCcggguugguGAGGCCGGUGCCUugcGCg -3'
miRNA:   3'- gcCGGC--UGCGG---------UUCUGGCCGCGGG---UG- -5'
18506 3' -63.2 NC_004681.1 + 18072 0.67 0.347388
Target:  5'- gCGGgaGugGCCGcauGGGCugCGGgGCCCACc -3'
miRNA:   3'- -GCCggCugCGGU---UCUG--GCCgCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.