miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 18202 0.72 0.169532
Target:  5'- uGGCCGgggGCGCCGAuGCCGGggaugccgaUGCCCAUa -3'
miRNA:   3'- gCCGGC---UGCGGUUcUGGCC---------GCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 18364 0.66 0.421737
Target:  5'- cCGG-UGGCGCCAucgacauggcAGGCCaggcGGCGgCCGCg -3'
miRNA:   3'- -GCCgGCUGCGGU----------UCUGG----CCGCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 18478 0.67 0.363076
Target:  5'- gCGGCCGcCGCCu-GGCCugccaugucgauGGCGCCa-- -3'
miRNA:   3'- -GCCGGCuGCGGuuCUGG------------CCGCGGgug -5'
18506 3' -63.2 NC_004681.1 + 18737 0.69 0.282891
Target:  5'- gGGCgaCGGCGgCGAGGCCGcGCGUgacaCCGCa -3'
miRNA:   3'- gCCG--GCUGCgGUUCUGGC-CGCG----GGUG- -5'
18506 3' -63.2 NC_004681.1 + 22396 0.72 0.165303
Target:  5'- gGGCUcacccuGCGCCAugacGGGCagGGCGCCCACg -3'
miRNA:   3'- gCCGGc-----UGCGGU----UCUGg-CCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 22491 0.69 0.282891
Target:  5'- gCGGCCGGgGU---GACCaGCGUCCACu -3'
miRNA:   3'- -GCCGGCUgCGguuCUGGcCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 22821 0.66 0.386683
Target:  5'- gCGGCCG-UGCCGguguucuGGGUCuGUGCCCACa -3'
miRNA:   3'- -GCCGGCuGCGGU-------UCUGGcCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 24053 0.68 0.320387
Target:  5'- aGGUCGGCGaacguguuggcacgcCCGAu-CCGGCGCCgCGCa -3'
miRNA:   3'- gCCGGCUGC---------------GGUUcuGGCCGCGG-GUG- -5'
18506 3' -63.2 NC_004681.1 + 24191 0.71 0.192158
Target:  5'- aGGCUGGCGCCGGaACCuuGCugGCCCACg -3'
miRNA:   3'- gCCGGCUGCGGUUcUGGc-CG--CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 24925 0.72 0.173421
Target:  5'- -cGCCGACGCCGAugaggucGACCGcGUugGCCCAUg -3'
miRNA:   3'- gcCGGCUGCGGUU-------CUGGC-CG--CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 25021 0.66 0.404398
Target:  5'- -aGUCGACGCCGcgcagaAGGgUGGCagcuGCCCACu -3'
miRNA:   3'- gcCGGCUGCGGU------UCUgGCCG----CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 25301 0.66 0.430574
Target:  5'- gCGGUCGcCGCCGuuGCCaGCGCCg-- -3'
miRNA:   3'- -GCCGGCuGCGGUucUGGcCGCGGgug -5'
18506 3' -63.2 NC_004681.1 + 25779 0.7 0.217388
Target:  5'- aGGCCGACGCCu-GGCCc-CGCCCc- -3'
miRNA:   3'- gCCGGCUGCGGuuCUGGccGCGGGug -5'
18506 3' -63.2 NC_004681.1 + 27055 0.66 0.390854
Target:  5'- uGGUCGGCGUCGAGGgaccuacaaccaacuCCGGUcuuggcaccGUCCACu -3'
miRNA:   3'- gCCGGCUGCGGUUCU---------------GGCCG---------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 29158 0.66 0.413012
Target:  5'- aCGGCC-ACGUCAAcGACCaaccccugGGCGgCCAUc -3'
miRNA:   3'- -GCCGGcUGCGGUU-CUGG--------CCGCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 30166 0.68 0.33219
Target:  5'- gCGGCCGcggaguggaccuACGCCAAGAacccugaCGGCaCCgACa -3'
miRNA:   3'- -GCCGGC------------UGCGGUUCUg------GCCGcGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 30260 0.67 0.338968
Target:  5'- gCGGCCGguacgGCGUCGAGACCaccgauccguGGUGaccugaaCCCACa -3'
miRNA:   3'- -GCCGGC-----UGCGGUUCUGG----------CCGC-------GGGUG- -5'
18506 3' -63.2 NC_004681.1 + 30645 0.67 0.379249
Target:  5'- uCGGUgGugGCaccuucGGACUGGCGuCCCGg -3'
miRNA:   3'- -GCCGgCugCGgu----UCUGGCCGC-GGGUg -5'
18506 3' -63.2 NC_004681.1 + 31241 0.67 0.355171
Target:  5'- gGGaCCGGCGCCGAGugUuuGGCuaCgGCa -3'
miRNA:   3'- gCC-GGCUGCGGUUCugG--CCGcgGgUG- -5'
18506 3' -63.2 NC_004681.1 + 32116 0.68 0.296359
Target:  5'- cCGGCCG-UGCCGAcACCcgcGGCGCCgAUc -3'
miRNA:   3'- -GCCGGCuGCGGUUcUGG---CCGCGGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.