miRNA display CGI


Results 61 - 80 of 109 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 32136 0.68 0.317486
Target:  5'- gCGGCCcACGCCAAcGACCaGCuggaCCGCg -3'
miRNA:   3'- -GCCGGcUGCGGUU-CUGGcCGcg--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 32414 0.66 0.421737
Target:  5'- uGGCgGaccuugacgaaGCGCCAAGGCUGGgGgUCGCc -3'
miRNA:   3'- gCCGgC-----------UGCGGUUCUGGCCgCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 33454 0.69 0.282891
Target:  5'- gCGGCCGGucucaGCCAgcgugaugugcGGGCgGGUGCCCu- -3'
miRNA:   3'- -GCCGGCUg----CGGU-----------UCUGgCCGCGGGug -5'
18506 3' -63.2 NC_004681.1 + 33475 0.66 0.387515
Target:  5'- uGGCCGugGCUGAucCUGGUGgCCGu -3'
miRNA:   3'- gCCGGCugCGGUUcuGGCCGCgGGUg -5'
18506 3' -63.2 NC_004681.1 + 35396 0.66 0.430574
Target:  5'- uGGCCGGauuCCucGACgGGCaCCCACu -3'
miRNA:   3'- gCCGGCUgc-GGuuCUGgCCGcGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 38799 0.69 0.282891
Target:  5'- gGGCCGcgcgcaagucCGCCGAGACCauccGgGCCUACg -3'
miRNA:   3'- gCCGGCu---------GCGGUUCUGGc---CgCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 39633 0.68 0.289563
Target:  5'- gCGGUCGAucugaCGCCGGGAUUGccaGCCCGCu -3'
miRNA:   3'- -GCCGGCU-----GCGGUUCUGGCcg-CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 40062 0.67 0.337453
Target:  5'- aGGCCGACGCCAgcacccagaucgacAGGCUGGagaUCAUg -3'
miRNA:   3'- gCCGGCUGCGGU--------------UCUGGCCgcgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 40076 0.73 0.14555
Target:  5'- aGGCCGA-GCCGGugaguuGAcCCGGCGCCgACg -3'
miRNA:   3'- gCCGGCUgCGGUU------CU-GGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 40152 0.67 0.355171
Target:  5'- aGGCCgcGACGCCGcAGAUCgaGGCGaugagauagaCCCGCg -3'
miRNA:   3'- gCCGG--CUGCGGU-UCUGG--CCGC----------GGGUG- -5'
18506 3' -63.2 NC_004681.1 + 40386 0.66 0.421737
Target:  5'- gCGGCac-CGCCAGcguGGCCGGUGUcuCCACc -3'
miRNA:   3'- -GCCGgcuGCGGUU---CUGGCCGCG--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 40459 0.68 0.289563
Target:  5'- gCGGCCGAugacauugaaCGCCGcGGCCGaCGCcgCCACg -3'
miRNA:   3'- -GCCGGCU----------GCGGUuCUGGCcGCG--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 41056 0.66 0.395898
Target:  5'- aCGGCCcucuucGGCGCCGccGCCGauGUGCUCACc -3'
miRNA:   3'- -GCCGG------CUGCGGUucUGGC--CGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 42122 0.69 0.282891
Target:  5'- aGGuuGGCGCgcaCGAGGuuGGCGUCgACa -3'
miRNA:   3'- gCCggCUGCG---GUUCUggCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 42241 0.67 0.363076
Target:  5'- aCGGCC---GCCGAGcuGCUGGUcccGCCCGCg -3'
miRNA:   3'- -GCCGGcugCGGUUC--UGGCCG---CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 42518 0.66 0.430574
Target:  5'- aGGCUGcGCGCCGacgAGACgGGgGCgCCGu -3'
miRNA:   3'- gCCGGC-UGCGGU---UCUGgCCgCG-GGUg -5'
18506 3' -63.2 NC_004681.1 + 44158 0.67 0.339727
Target:  5'- cCGGCCG-CGaauaCGAGugCuacGGCGCCC-Ca -3'
miRNA:   3'- -GCCGGCuGCg---GUUCugG---CCGCGGGuG- -5'
18506 3' -63.2 NC_004681.1 + 44483 0.69 0.269912
Target:  5'- aGGgUGAguUGCCcGGACgGGCGCCCGu -3'
miRNA:   3'- gCCgGCU--GCGGuUCUGgCCGCGGGUg -5'
18506 3' -63.2 NC_004681.1 + 45097 0.73 0.14932
Target:  5'- gCGGUCu-CGCuCAAGACCGGgGCCgACg -3'
miRNA:   3'- -GCCGGcuGCG-GUUCUGGCCgCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 45696 0.73 0.139698
Target:  5'- uGGCCGACGCgGAGgaggcACCGGCcaccuugcgggcgauGUCCACc -3'
miRNA:   3'- gCCGGCUGCGgUUC-----UGGCCG---------------CGGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.