Results 81 - 100 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 46605 | 0.67 | 0.379249 |
Target: 5'- cCGGCCcacuCGCCGAGGaccccgccCCGcacaCGCCCACu -3' miRNA: 3'- -GCCGGcu--GCGGUUCU--------GGCc---GCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 46731 | 0.74 | 0.126984 |
Target: 5'- gCGGCauCGACGCUgucaugaacgugguGGGACCGGCGCUgCGCg -3' miRNA: 3'- -GCCG--GCUGCGG--------------UUCUGGCCGCGG-GUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 47238 | 0.66 | 0.413012 |
Target: 5'- -cGCCGACaaUGAGACCauccGCGCCUACa -3' miRNA: 3'- gcCGGCUGcgGUUCUGGc---CGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 50079 | 0.68 | 0.317486 |
Target: 5'- gGGUCGACGuCCAGGACUacaaGGaCGgCUACa -3' miRNA: 3'- gCCGGCUGC-GGUUCUGG----CC-GCgGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 50323 | 0.66 | 0.430574 |
Target: 5'- -aGCCGaggGCGCCAuuGGAgCUGGCGaCCACc -3' miRNA: 3'- gcCGGC---UGCGGU--UCU-GGCCGCgGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 50369 | 0.67 | 0.355171 |
Target: 5'- gGGaCGugGUCGAGGgCGGCuaCCGCu -3' miRNA: 3'- gCCgGCugCGGUUCUgGCCGcgGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 50974 | 0.78 | 0.059441 |
Target: 5'- -cGCCGACGCCAAGcgucaauggaacACCGGCGUCgACg -3' miRNA: 3'- gcCGGCUGCGGUUC------------UGGCCGCGGgUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 51874 | 0.7 | 0.245399 |
Target: 5'- gCGGCCuuggagauGAUGUUcAGACCGGCguuacucuuGCCCGCg -3' miRNA: 3'- -GCCGG--------CUGCGGuUCUGGCCG---------CGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 53617 | 0.73 | 0.138269 |
Target: 5'- aGGCCcagacgGAgGCCAAGAacgaCGGCGCCCu- -3' miRNA: 3'- gCCGG------CUgCGGUUCUg---GCCGCGGGug -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 54860 | 0.73 | 0.145177 |
Target: 5'- cCGGCUGACGCCAAGGacgaccgCGGCaacagcuGCCCGa -3' miRNA: 3'- -GCCGGCUGCGGUUCUg------GCCG-------CGGGUg -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 55995 | 0.68 | 0.33219 |
Target: 5'- aGGCCcucacgcagcgcGACGCCAAGGagGGCGaccuCCGCa -3' miRNA: 3'- gCCGG------------CUGCGGUUCUggCCGCg---GGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 56075 | 0.71 | 0.206972 |
Target: 5'- gGGCCuGGCaGCCGAGcACCGGCaCCC-Cg -3' miRNA: 3'- gCCGG-CUG-CGGUUC-UGGCCGcGGGuG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 56209 | 0.69 | 0.27634 |
Target: 5'- uGaGUCgGugGCCuGGACCGGCGUCgACc -3' miRNA: 3'- gC-CGG-CugCGGuUCUGGCCGCGGgUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 58432 | 1.09 | 0.000283 |
Target: 5'- gCGGCCGACGCCAAGACCGGCGCCCACg -3' miRNA: 3'- -GCCGGCUGCGGUUCUGGCCGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 58738 | 0.7 | 0.239567 |
Target: 5'- gCGGCCGugGCgCAGGACaccuugaGGgGCCgAg -3' miRNA: 3'- -GCCGGCugCG-GUUCUGg------CCgCGGgUg -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 58984 | 0.69 | 0.257417 |
Target: 5'- aGGCCGcccaggUGCUcgAAGACCucgugggggagGGCGCCCACc -3' miRNA: 3'- gCCGGCu-----GCGG--UUCUGG-----------CCGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 61121 | 0.66 | 0.413012 |
Target: 5'- aGGCCGuCGCCAAcuucACCGucGUGUCCAa -3' miRNA: 3'- gCCGGCuGCGGUUc---UGGC--CGCGGGUg -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 61741 | 0.7 | 0.22222 |
Target: 5'- aGGCCGcccucgcGCGCCAccAGACCG-CGgCCGCc -3' miRNA: 3'- gCCGGC-------UGCGGU--UCUGGCcGCgGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 63538 | 0.68 | 0.33219 |
Target: 5'- cCGGCCGAgGCUggAAGcCUGGUGgCCAg -3' miRNA: 3'- -GCCGGCUgCGG--UUCuGGCCGCgGGUg -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 64480 | 0.67 | 0.347388 |
Target: 5'- aGGaCGAUGCCGGuGGCCauuGuCGCCCACg -3' miRNA: 3'- gCCgGCUGCGGUU-CUGGc--C-GCGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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