Results 101 - 109 of 109 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18506 | 3' | -63.2 | NC_004681.1 | + | 64591 | 0.67 | 0.355171 |
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Target: 5'- aGGugaCCGGCGaCCAggaauGGACCGGCGaaCGCa -3' miRNA: 3'- gCC---GGCUGC-GGU-----UCUGGCCGCggGUG- -5' |
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| 18506 | 3' | -63.2 | NC_004681.1 | + | 65029 | 0.67 | 0.371102 |
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Target: 5'- aGGCgCGuCGCCAccucgugcuccAGGCgGGCGCCgCGg -3' miRNA: 3'- gCCG-GCuGCGGU-----------UCUGgCCGCGG-GUg -5' |
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| 18506 | 3' | -63.2 | NC_004681.1 | + | 65130 | 0.69 | 0.282891 |
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Target: 5'- aCGGCCGccacaacuaccGCGUCu---CCGGUGUCCGCg -3' miRNA: 3'- -GCCGGC-----------UGCGGuucuGGCCGCGGGUG- -5' |
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| 18506 | 3' | -63.2 | NC_004681.1 | + | 65888 | 0.7 | 0.217388 |
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Target: 5'- gCGGCCGAgGCCGAGA-CGGaCGaacuCCGCc -3' miRNA: 3'- -GCCGGCUgCGGUUCUgGCC-GCg---GGUG- -5' |
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| 18506 | 3' | -63.2 | NC_004681.1 | + | 65967 | 0.66 | 0.404398 |
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Target: 5'- aCGGCaCGAagGCCGAGAa-GGCuGCCgCGCa -3' miRNA: 3'- -GCCG-GCUg-CGGUUCUggCCG-CGG-GUG- -5' |
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| 18506 | 3' | -63.2 | NC_004681.1 | + | 66741 | 0.67 | 0.347388 |
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Target: 5'- uGGCCaauGCGCagAAGGCCGGUggcaacgccGCCUACa -3' miRNA: 3'- gCCGGc--UGCGg-UUCUGGCCG---------CGGGUG- -5' |
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| 18506 | 3' | -63.2 | NC_004681.1 | + | 67697 | 0.66 | 0.413012 |
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Target: 5'- uCGGCacCGACGaCAAGggccGCUGGCGCuaCCGCa -3' miRNA: 3'- -GCCG--GCUGCgGUUC----UGGCCGCG--GGUG- -5' |
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| 18506 | 3' | -63.2 | NC_004681.1 | + | 68889 | 0.74 | 0.118391 |
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Target: 5'- gCGGCCGACGCCAucga-GGCGCUgACc -3' miRNA: 3'- -GCCGGCUGCGGUucuggCCGCGGgUG- -5' |
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| 18506 | 3' | -63.2 | NC_004681.1 | + | 70933 | 0.68 | 0.331443 |
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Target: 5'- gCGGCCGcugaGCGUgGAGACCgugacacGGUGCgCGCu -3' miRNA: 3'- -GCCGGC----UGCGgUUCUGG-------CCGCGgGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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