miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 70933 0.68 0.331443
Target:  5'- gCGGCCGcugaGCGUgGAGACCgugacacGGUGCgCGCu -3'
miRNA:   3'- -GCCGGC----UGCGgUUCUGG-------CCGCGgGUG- -5'
18506 3' -63.2 NC_004681.1 + 68889 0.74 0.118391
Target:  5'- gCGGCCGACGCCAucga-GGCGCUgACc -3'
miRNA:   3'- -GCCGGCUGCGGUucuggCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 67697 0.66 0.413012
Target:  5'- uCGGCacCGACGaCAAGggccGCUGGCGCuaCCGCa -3'
miRNA:   3'- -GCCG--GCUGCgGUUC----UGGCCGCG--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 66741 0.67 0.347388
Target:  5'- uGGCCaauGCGCagAAGGCCGGUggcaacgccGCCUACa -3'
miRNA:   3'- gCCGGc--UGCGg-UUCUGGCCG---------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 65967 0.66 0.404398
Target:  5'- aCGGCaCGAagGCCGAGAa-GGCuGCCgCGCa -3'
miRNA:   3'- -GCCG-GCUg-CGGUUCUggCCG-CGG-GUG- -5'
18506 3' -63.2 NC_004681.1 + 65888 0.7 0.217388
Target:  5'- gCGGCCGAgGCCGAGA-CGGaCGaacuCCGCc -3'
miRNA:   3'- -GCCGGCUgCGGUUCUgGCC-GCg---GGUG- -5'
18506 3' -63.2 NC_004681.1 + 65130 0.69 0.282891
Target:  5'- aCGGCCGccacaacuaccGCGUCu---CCGGUGUCCGCg -3'
miRNA:   3'- -GCCGGC-----------UGCGGuucuGGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 65029 0.67 0.371102
Target:  5'- aGGCgCGuCGCCAccucgugcuccAGGCgGGCGCCgCGg -3'
miRNA:   3'- gCCG-GCuGCGGU-----------UCUGgCCGCGG-GUg -5'
18506 3' -63.2 NC_004681.1 + 64591 0.67 0.355171
Target:  5'- aGGugaCCGGCGaCCAggaauGGACCGGCGaaCGCa -3'
miRNA:   3'- gCC---GGCUGC-GGU-----UCUGGCCGCggGUG- -5'
18506 3' -63.2 NC_004681.1 + 64480 0.67 0.347388
Target:  5'- aGGaCGAUGCCGGuGGCCauuGuCGCCCACg -3'
miRNA:   3'- gCCgGCUGCGGUU-CUGGc--C-GCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 63538 0.68 0.33219
Target:  5'- cCGGCCGAgGCUggAAGcCUGGUGgCCAg -3'
miRNA:   3'- -GCCGGCUgCGG--UUCuGGCCGCgGGUg -5'
18506 3' -63.2 NC_004681.1 + 61741 0.7 0.22222
Target:  5'- aGGCCGcccucgcGCGCCAccAGACCG-CGgCCGCc -3'
miRNA:   3'- gCCGGC-------UGCGGU--UCUGGCcGCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 61121 0.66 0.413012
Target:  5'- aGGCCGuCGCCAAcuucACCGucGUGUCCAa -3'
miRNA:   3'- gCCGGCuGCGGUUc---UGGC--CGCGGGUg -5'
18506 3' -63.2 NC_004681.1 + 58984 0.69 0.257417
Target:  5'- aGGCCGcccaggUGCUcgAAGACCucgugggggagGGCGCCCACc -3'
miRNA:   3'- gCCGGCu-----GCGG--UUCUGG-----------CCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 58738 0.7 0.239567
Target:  5'- gCGGCCGugGCgCAGGACaccuugaGGgGCCgAg -3'
miRNA:   3'- -GCCGGCugCG-GUUCUGg------CCgCGGgUg -5'
18506 3' -63.2 NC_004681.1 + 58432 1.09 0.000283
Target:  5'- gCGGCCGACGCCAAGACCGGCGCCCACg -3'
miRNA:   3'- -GCCGGCUGCGGUUCUGGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 56209 0.69 0.27634
Target:  5'- uGaGUCgGugGCCuGGACCGGCGUCgACc -3'
miRNA:   3'- gC-CGG-CugCGGuUCUGGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 56075 0.71 0.206972
Target:  5'- gGGCCuGGCaGCCGAGcACCGGCaCCC-Cg -3'
miRNA:   3'- gCCGG-CUG-CGGUUC-UGGCCGcGGGuG- -5'
18506 3' -63.2 NC_004681.1 + 55995 0.68 0.33219
Target:  5'- aGGCCcucacgcagcgcGACGCCAAGGagGGCGaccuCCGCa -3'
miRNA:   3'- gCCGG------------CUGCGGUUCUggCCGCg---GGUG- -5'
18506 3' -63.2 NC_004681.1 + 54860 0.73 0.145177
Target:  5'- cCGGCUGACGCCAAGGacgaccgCGGCaacagcuGCCCGa -3'
miRNA:   3'- -GCCGGCUGCGGUUCUg------GCCG-------CGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.