miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 53617 0.73 0.138269
Target:  5'- aGGCCcagacgGAgGCCAAGAacgaCGGCGCCCu- -3'
miRNA:   3'- gCCGG------CUgCGGUUCUg---GCCGCGGGug -5'
18506 3' -63.2 NC_004681.1 + 51874 0.7 0.245399
Target:  5'- gCGGCCuuggagauGAUGUUcAGACCGGCguuacucuuGCCCGCg -3'
miRNA:   3'- -GCCGG--------CUGCGGuUCUGGCCG---------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 50974 0.78 0.059441
Target:  5'- -cGCCGACGCCAAGcgucaauggaacACCGGCGUCgACg -3'
miRNA:   3'- gcCGGCUGCGGUUC------------UGGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 50369 0.67 0.355171
Target:  5'- gGGaCGugGUCGAGGgCGGCuaCCGCu -3'
miRNA:   3'- gCCgGCugCGGUUCUgGCCGcgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 50323 0.66 0.430574
Target:  5'- -aGCCGaggGCGCCAuuGGAgCUGGCGaCCACc -3'
miRNA:   3'- gcCGGC---UGCGGU--UCU-GGCCGCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 50079 0.68 0.317486
Target:  5'- gGGUCGACGuCCAGGACUacaaGGaCGgCUACa -3'
miRNA:   3'- gCCGGCUGC-GGUUCUGG----CC-GCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 47238 0.66 0.413012
Target:  5'- -cGCCGACaaUGAGACCauccGCGCCUACa -3'
miRNA:   3'- gcCGGCUGcgGUUCUGGc---CGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 46731 0.74 0.126984
Target:  5'- gCGGCauCGACGCUgucaugaacgugguGGGACCGGCGCUgCGCg -3'
miRNA:   3'- -GCCG--GCUGCGG--------------UUCUGGCCGCGG-GUG- -5'
18506 3' -63.2 NC_004681.1 + 46605 0.67 0.379249
Target:  5'- cCGGCCcacuCGCCGAGGaccccgccCCGcacaCGCCCACu -3'
miRNA:   3'- -GCCGGcu--GCGGUUCU--------GGCc---GCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 45696 0.73 0.139698
Target:  5'- uGGCCGACGCgGAGgaggcACCGGCcaccuugcgggcgauGUCCACc -3'
miRNA:   3'- gCCGGCUGCGgUUC-----UGGCCG---------------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 45097 0.73 0.14932
Target:  5'- gCGGUCu-CGCuCAAGACCGGgGCCgACg -3'
miRNA:   3'- -GCCGGcuGCG-GUUCUGGCCgCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 44483 0.69 0.269912
Target:  5'- aGGgUGAguUGCCcGGACgGGCGCCCGu -3'
miRNA:   3'- gCCgGCU--GCGGuUCUGgCCGCGGGUg -5'
18506 3' -63.2 NC_004681.1 + 44158 0.67 0.339727
Target:  5'- cCGGCCG-CGaauaCGAGugCuacGGCGCCC-Ca -3'
miRNA:   3'- -GCCGGCuGCg---GUUCugG---CCGCGGGuG- -5'
18506 3' -63.2 NC_004681.1 + 42518 0.66 0.430574
Target:  5'- aGGCUGcGCGCCGacgAGACgGGgGCgCCGu -3'
miRNA:   3'- gCCGGC-UGCGGU---UCUGgCCgCG-GGUg -5'
18506 3' -63.2 NC_004681.1 + 42241 0.67 0.363076
Target:  5'- aCGGCC---GCCGAGcuGCUGGUcccGCCCGCg -3'
miRNA:   3'- -GCCGGcugCGGUUC--UGGCCG---CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 42122 0.69 0.282891
Target:  5'- aGGuuGGCGCgcaCGAGGuuGGCGUCgACa -3'
miRNA:   3'- gCCggCUGCG---GUUCUggCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 41056 0.66 0.395898
Target:  5'- aCGGCCcucuucGGCGCCGccGCCGauGUGCUCACc -3'
miRNA:   3'- -GCCGG------CUGCGGUucUGGC--CGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 40459 0.68 0.289563
Target:  5'- gCGGCCGAugacauugaaCGCCGcGGCCGaCGCcgCCACg -3'
miRNA:   3'- -GCCGGCU----------GCGGUuCUGGCcGCG--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 40386 0.66 0.421737
Target:  5'- gCGGCac-CGCCAGcguGGCCGGUGUcuCCACc -3'
miRNA:   3'- -GCCGgcuGCGGUU---CUGGCCGCG--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 40152 0.67 0.355171
Target:  5'- aGGCCgcGACGCCGcAGAUCgaGGCGaugagauagaCCCGCg -3'
miRNA:   3'- gCCGG--CUGCGGU-UCUGG--CCGC----------GGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.