miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 40076 0.73 0.14555
Target:  5'- aGGCCGA-GCCGGugaguuGAcCCGGCGCCgACg -3'
miRNA:   3'- gCCGGCUgCGGUU------CU-GGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 40062 0.67 0.337453
Target:  5'- aGGCCGACGCCAgcacccagaucgacAGGCUGGagaUCAUg -3'
miRNA:   3'- gCCGGCUGCGGU--------------UCUGGCCgcgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 39633 0.68 0.289563
Target:  5'- gCGGUCGAucugaCGCCGGGAUUGccaGCCCGCu -3'
miRNA:   3'- -GCCGGCU-----GCGGUUCUGGCcg-CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 38799 0.69 0.282891
Target:  5'- gGGCCGcgcgcaagucCGCCGAGACCauccGgGCCUACg -3'
miRNA:   3'- gCCGGCu---------GCGGUUCUGGc---CgCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 35396 0.66 0.430574
Target:  5'- uGGCCGGauuCCucGACgGGCaCCCACu -3'
miRNA:   3'- gCCGGCUgc-GGuuCUGgCCGcGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 33475 0.66 0.387515
Target:  5'- uGGCCGugGCUGAucCUGGUGgCCGu -3'
miRNA:   3'- gCCGGCugCGGUUcuGGCCGCgGGUg -5'
18506 3' -63.2 NC_004681.1 + 33454 0.69 0.282891
Target:  5'- gCGGCCGGucucaGCCAgcgugaugugcGGGCgGGUGCCCu- -3'
miRNA:   3'- -GCCGGCUg----CGGU-----------UCUGgCCGCGGGug -5'
18506 3' -63.2 NC_004681.1 + 32414 0.66 0.421737
Target:  5'- uGGCgGaccuugacgaaGCGCCAAGGCUGGgGgUCGCc -3'
miRNA:   3'- gCCGgC-----------UGCGGUUCUGGCCgCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 32136 0.68 0.317486
Target:  5'- gCGGCCcACGCCAAcGACCaGCuggaCCGCg -3'
miRNA:   3'- -GCCGGcUGCGGUU-CUGGcCGcg--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 32116 0.68 0.296359
Target:  5'- cCGGCCG-UGCCGAcACCcgcGGCGCCgAUc -3'
miRNA:   3'- -GCCGGCuGCGGUUcUGG---CCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 31241 0.67 0.355171
Target:  5'- gGGaCCGGCGCCGAGugUuuGGCuaCgGCa -3'
miRNA:   3'- gCC-GGCUGCGGUUCugG--CCGcgGgUG- -5'
18506 3' -63.2 NC_004681.1 + 30645 0.67 0.379249
Target:  5'- uCGGUgGugGCaccuucGGACUGGCGuCCCGg -3'
miRNA:   3'- -GCCGgCugCGgu----UCUGGCCGC-GGGUg -5'
18506 3' -63.2 NC_004681.1 + 30260 0.67 0.338968
Target:  5'- gCGGCCGguacgGCGUCGAGACCaccgauccguGGUGaccugaaCCCACa -3'
miRNA:   3'- -GCCGGC-----UGCGGUUCUGG----------CCGC-------GGGUG- -5'
18506 3' -63.2 NC_004681.1 + 30166 0.68 0.33219
Target:  5'- gCGGCCGcggaguggaccuACGCCAAGAacccugaCGGCaCCgACa -3'
miRNA:   3'- -GCCGGC------------UGCGGUUCUg------GCCGcGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 29158 0.66 0.413012
Target:  5'- aCGGCC-ACGUCAAcGACCaaccccugGGCGgCCAUc -3'
miRNA:   3'- -GCCGGcUGCGGUU-CUGG--------CCGCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 27055 0.66 0.390854
Target:  5'- uGGUCGGCGUCGAGGgaccuacaaccaacuCCGGUcuuggcaccGUCCACu -3'
miRNA:   3'- gCCGGCUGCGGUUCU---------------GGCCG---------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 25779 0.7 0.217388
Target:  5'- aGGCCGACGCCu-GGCCc-CGCCCc- -3'
miRNA:   3'- gCCGGCUGCGGuuCUGGccGCGGGug -5'
18506 3' -63.2 NC_004681.1 + 25301 0.66 0.430574
Target:  5'- gCGGUCGcCGCCGuuGCCaGCGCCg-- -3'
miRNA:   3'- -GCCGGCuGCGGUucUGGcCGCGGgug -5'
18506 3' -63.2 NC_004681.1 + 25021 0.66 0.404398
Target:  5'- -aGUCGACGCCGcgcagaAGGgUGGCagcuGCCCACu -3'
miRNA:   3'- gcCGGCUGCGGU------UCUgGCCG----CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 24925 0.72 0.173421
Target:  5'- -cGCCGACGCCGAugaggucGACCGcGUugGCCCAUg -3'
miRNA:   3'- gcCGGCUGCGGUU-------CUGGC-CG--CGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.