miRNA display CGI


Results 61 - 80 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 24191 0.71 0.192158
Target:  5'- aGGCUGGCGCCGGaACCuuGCugGCCCACg -3'
miRNA:   3'- gCCGGCUGCGGUUcUGGc-CG--CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 24053 0.68 0.320387
Target:  5'- aGGUCGGCGaacguguuggcacgcCCGAu-CCGGCGCCgCGCa -3'
miRNA:   3'- gCCGGCUGC---------------GGUUcuGGCCGCGG-GUG- -5'
18506 3' -63.2 NC_004681.1 + 22821 0.66 0.386683
Target:  5'- gCGGCCG-UGCCGguguucuGGGUCuGUGCCCACa -3'
miRNA:   3'- -GCCGGCuGCGGU-------UCUGGcCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 22491 0.69 0.282891
Target:  5'- gCGGCCGGgGU---GACCaGCGUCCACu -3'
miRNA:   3'- -GCCGGCUgCGguuCUGGcCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 22396 0.72 0.165303
Target:  5'- gGGCUcacccuGCGCCAugacGGGCagGGCGCCCACg -3'
miRNA:   3'- gCCGGc-----UGCGGU----UCUGg-CCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 18737 0.69 0.282891
Target:  5'- gGGCgaCGGCGgCGAGGCCGcGCGUgacaCCGCa -3'
miRNA:   3'- gCCG--GCUGCgGUUCUGGC-CGCG----GGUG- -5'
18506 3' -63.2 NC_004681.1 + 18478 0.67 0.363076
Target:  5'- gCGGCCGcCGCCu-GGCCugccaugucgauGGCGCCa-- -3'
miRNA:   3'- -GCCGGCuGCGGuuCUGG------------CCGCGGgug -5'
18506 3' -63.2 NC_004681.1 + 18364 0.66 0.421737
Target:  5'- cCGG-UGGCGCCAucgacauggcAGGCCaggcGGCGgCCGCg -3'
miRNA:   3'- -GCCgGCUGCGGU----------UCUGG----CCGCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 18202 0.72 0.169532
Target:  5'- uGGCCGgggGCGCCGAuGCCGGggaugccgaUGCCCAUa -3'
miRNA:   3'- gCCGGC---UGCGGUUcUGGCC---------GCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 18072 0.67 0.347388
Target:  5'- gCGGgaGugGCCGcauGGGCugCGGgGCCCACc -3'
miRNA:   3'- -GCCggCugCGGU---UCUG--GCCgCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 17943 0.7 0.245399
Target:  5'- -cGCCGggGCGCCcggguugguGAGGCCGGUGCCUugcGCg -3'
miRNA:   3'- gcCGGC--UGCGG---------UUCUGGCCGCGGG---UG- -5'
18506 3' -63.2 NC_004681.1 + 17824 0.68 0.303278
Target:  5'- gCGGCCG-CGCaAGGcACCGGC-CUCACc -3'
miRNA:   3'- -GCCGGCuGCGgUUC-UGGCCGcGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 17562 0.67 0.371102
Target:  5'- aGGCaCGAaGCCAuGAUCGGUGagCCACu -3'
miRNA:   3'- gCCG-GCUgCGGUuCUGGCCGCg-GGUG- -5'
18506 3' -63.2 NC_004681.1 + 17288 0.7 0.233851
Target:  5'- cCGGagaCGACGCCcugcuGGCgCGcGUGCCCGCg -3'
miRNA:   3'- -GCCg--GCUGCGGuu---CUG-GC-CGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 16633 0.68 0.303278
Target:  5'- aCGGCCGcCGUgGGGACCGuuGCCgcCACc -3'
miRNA:   3'- -GCCGGCuGCGgUUCUGGCcgCGG--GUG- -5'
18506 3' -63.2 NC_004681.1 + 16578 0.66 0.412145
Target:  5'- gGGCgCGGCGCCGaguaguccgugggGGGCUGGaaCGCcaCCACg -3'
miRNA:   3'- gCCG-GCUGCGGU-------------UCUGGCC--GCG--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 16496 0.69 0.272469
Target:  5'- uGGCCuggucacccuuggagGugGCCGAGGCaacccacuUGGCGCCCuCg -3'
miRNA:   3'- gCCGG---------------CugCGGUUCUG--------GCCGCGGGuG- -5'
18506 3' -63.2 NC_004681.1 + 16179 0.66 0.421737
Target:  5'- gCGGUggUGACGCCAccgAGGgCGGCaGUCUGCg -3'
miRNA:   3'- -GCCG--GCUGCGGU---UCUgGCCG-CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 16143 0.67 0.347388
Target:  5'- gCGGCgGAUGCgGuGACagcggCGGCGCCCu- -3'
miRNA:   3'- -GCCGgCUGCGgUuCUG-----GCCGCGGGug -5'
18506 3' -63.2 NC_004681.1 + 15940 0.66 0.430574
Target:  5'- aGaGCCuuCGUCAGGGuCUGGUGCUCACc -3'
miRNA:   3'- gC-CGGcuGCGGUUCU-GGCCGCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.