miRNA display CGI


Results 81 - 100 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 15380 0.68 0.31032
Target:  5'- -cGCCGACGCCAuccAGAaCGGCacccuGUCCGCc -3'
miRNA:   3'- gcCGGCUGCGGU---UCUgGCCG-----CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 14896 0.71 0.201927
Target:  5'- gGGCCagcugGGCGCCAGccuucaggauGGCCagGGCGUCCGCg -3'
miRNA:   3'- gCCGG-----CUGCGGUU----------CUGG--CCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 14778 0.75 0.10948
Target:  5'- -cGCgGACGCCcuggccauccugAAGGCUGGCGCCCAg -3'
miRNA:   3'- gcCGgCUGCGG------------UUCUGGCCGCGGGUg -5'
18506 3' -63.2 NC_004681.1 + 14572 0.66 0.395898
Target:  5'- aCGGCCGcaguCGCCuucGGcACCGGCaaGCUgGCu -3'
miRNA:   3'- -GCCGGCu---GCGGu--UC-UGGCCG--CGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 14472 0.67 0.366272
Target:  5'- gCGcGCCGccucCGCCGAGcagggcgcgcuggugGCCGGUGCUgGCg -3'
miRNA:   3'- -GC-CGGCu---GCGGUUC---------------UGGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 14400 0.7 0.222763
Target:  5'- -cGCCGACGCCAAGcGCaagcaGGCGgCCGa -3'
miRNA:   3'- gcCGGCUGCGGUUC-UGg----CCGCgGGUg -5'
18506 3' -63.2 NC_004681.1 + 12094 0.69 0.263604
Target:  5'- uCGGCUugGugGCCuuguAGccAgCGGUGCCCACg -3'
miRNA:   3'- -GCCGG--CugCGGu---UC--UgGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 12065 0.67 0.358318
Target:  5'- aCGGCCGcAUGgaCGAGGCCGaGUacguggccgagguccGCCCGCg -3'
miRNA:   3'- -GCCGGC-UGCg-GUUCUGGC-CG---------------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 11840 0.66 0.404398
Target:  5'- aCGGaCGACaCCAAGAUuuggcagucgCGGCGCgCGCa -3'
miRNA:   3'- -GCCgGCUGcGGUUCUG----------GCCGCGgGUG- -5'
18506 3' -63.2 NC_004681.1 + 11776 0.67 0.355171
Target:  5'- uGGCCGcuuCuaCGAGAUCGGUGCCauCACc -3'
miRNA:   3'- gCCGGCu--GcgGUUCUGGCCGCGG--GUG- -5'
18506 3' -63.2 NC_004681.1 + 10654 0.71 0.206972
Target:  5'- -uGCCuGGCGCCc---CCGGUGCCCGCg -3'
miRNA:   3'- gcCGG-CUGCGGuucuGGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 10310 0.67 0.347388
Target:  5'- gGaGCCaGgGCCAGGugugGCCGGUGCuCCACu -3'
miRNA:   3'- gC-CGGcUgCGGUUC----UGGCCGCG-GGUG- -5'
18506 3' -63.2 NC_004681.1 + 10266 0.68 0.31032
Target:  5'- aGGCCGGuCGUgucgaagaUGAGGCCGGUGUCgCGCu -3'
miRNA:   3'- gCCGGCU-GCG--------GUUCUGGCCGCGG-GUG- -5'
18506 3' -63.2 NC_004681.1 + 9603 0.67 0.363076
Target:  5'- aGGCCGAgGCgCucu-UCGGCGCgCACg -3'
miRNA:   3'- gCCGGCUgCG-GuucuGGCCGCGgGUG- -5'
18506 3' -63.2 NC_004681.1 + 9088 0.7 0.222763
Target:  5'- uGGCCG-CGUCGucACCGGCGCCg-- -3'
miRNA:   3'- gCCGGCuGCGGUucUGGCCGCGGgug -5'
18506 3' -63.2 NC_004681.1 + 8911 0.68 0.289563
Target:  5'- uGGCUGGCGgCGGGuaccCCGGCGUCaACg -3'
miRNA:   3'- gCCGGCUGCgGUUCu---GGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 8623 0.66 0.404398
Target:  5'- uGGCCGAUgGCCGcgGGGgCGGUcucaccGUCCGCg -3'
miRNA:   3'- gCCGGCUG-CGGU--UCUgGCCG------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 8239 0.71 0.18743
Target:  5'- aGGCCGAgGUCGAGGCgcaCGaGCGCgCGCa -3'
miRNA:   3'- gCCGGCUgCGGUUCUG---GC-CGCGgGUG- -5'
18506 3' -63.2 NC_004681.1 + 7826 0.66 0.404398
Target:  5'- aGGCCGgaACGCCAcaAGAuucaaCCGaagaauCGCCCGCu -3'
miRNA:   3'- gCCGGC--UGCGGU--UCU-----GGCc-----GCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 7498 0.74 0.112378
Target:  5'- cCGGUCGAUGCCuGGGCCugGGUGCgCGCg -3'
miRNA:   3'- -GCCGGCUGCGGuUCUGG--CCGCGgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.