miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 18737 0.69 0.282891
Target:  5'- gGGCgaCGGCGgCGAGGCCGcGCGUgacaCCGCa -3'
miRNA:   3'- gCCG--GCUGCgGUUCUGGC-CGCG----GGUG- -5'
18506 3' -63.2 NC_004681.1 + 61741 0.7 0.22222
Target:  5'- aGGCCGcccucgcGCGCCAccAGACCG-CGgCCGCc -3'
miRNA:   3'- gCCGGC-------UGCGGU--UCUGGCcGCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 9088 0.7 0.222763
Target:  5'- uGGCCG-CGUCGucACCGGCGCCg-- -3'
miRNA:   3'- gCCGGCuGCGGUucUGGCCGCGGgug -5'
18506 3' -63.2 NC_004681.1 + 14400 0.7 0.222763
Target:  5'- -cGCCGACGCCAAGcGCaagcaGGCGgCCGa -3'
miRNA:   3'- gcCGGCUGCGGUUC-UGg----CCGCgGGUg -5'
18506 3' -63.2 NC_004681.1 + 17288 0.7 0.233851
Target:  5'- cCGGagaCGACGCCcugcuGGCgCGcGUGCCCGCg -3'
miRNA:   3'- -GCCg--GCUGCGGuu---CUG-GC-CGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 58984 0.69 0.257417
Target:  5'- aGGCCGcccaggUGCUcgAAGACCucgugggggagGGCGCCCACc -3'
miRNA:   3'- gCCGGCu-----GCGG--UUCUGG-----------CCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 7213 0.69 0.269912
Target:  5'- gCGGCCGGUGCCGGuaaCGGCGacaCCGCg -3'
miRNA:   3'- -GCCGGCUGCGGUUcugGCCGCg--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 2294 0.69 0.269912
Target:  5'- gCGGCuacacccuCGAUGacaucgaaugcaCCGAGGUCGGCGCCCACu -3'
miRNA:   3'- -GCCG--------GCUGC------------GGUUCUGGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 56209 0.69 0.27634
Target:  5'- uGaGUCgGugGCCuGGACCGGCGUCgACc -3'
miRNA:   3'- gC-CGG-CugCGGuUCUGGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 10654 0.71 0.206972
Target:  5'- -uGCCuGGCGCCc---CCGGUGCCCGCg -3'
miRNA:   3'- gcCGG-CUGCGGuucuGGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 8239 0.71 0.18743
Target:  5'- aGGCCGAgGUCGAGGCgcaCGaGCGCgCGCa -3'
miRNA:   3'- gCCGGCUgCGGUUCUG---GC-CGCGgGUG- -5'
18506 3' -63.2 NC_004681.1 + 45097 0.73 0.14932
Target:  5'- gCGGUCu-CGCuCAAGACCGGgGCCgACg -3'
miRNA:   3'- -GCCGGcuGCG-GUUCUGGCCgCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 50974 0.78 0.059441
Target:  5'- -cGCCGACGCCAAGcgucaauggaacACCGGCGUCgACg -3'
miRNA:   3'- gcCGGCUGCGGUUC------------UGGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 7264 0.75 0.096013
Target:  5'- gCGGCCGuccaccucgGCGCCGAGugCGcCGCCUGCg -3'
miRNA:   3'- -GCCGGC---------UGCGGUUCugGCcGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 14778 0.75 0.10948
Target:  5'- -cGCgGACGCCcuggccauccugAAGGCUGGCGCCCAg -3'
miRNA:   3'- gcCGgCUGCGG------------UUCUGGCCGCGGGUg -5'
18506 3' -63.2 NC_004681.1 + 7498 0.74 0.112378
Target:  5'- cCGGUCGAUGCCuGGGCCugGGUGCgCGCg -3'
miRNA:   3'- -GCCGGCUGCGGuUCUGG--CCGCGgGUG- -5'
18506 3' -63.2 NC_004681.1 + 68889 0.74 0.118391
Target:  5'- gCGGCCGACGCCAucga-GGCGCUgACc -3'
miRNA:   3'- -GCCGGCUGCGGUucuggCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 46731 0.74 0.126984
Target:  5'- gCGGCauCGACGCUgucaugaacgugguGGGACCGGCGCUgCGCg -3'
miRNA:   3'- -GCCG--GCUGCGG--------------UUCUGGCCGCGG-GUG- -5'
18506 3' -63.2 NC_004681.1 + 53617 0.73 0.138269
Target:  5'- aGGCCcagacgGAgGCCAAGAacgaCGGCGCCCu- -3'
miRNA:   3'- gCCGG------CUgCGGUUCUg---GCCGCGGGug -5'
18506 3' -63.2 NC_004681.1 + 54860 0.73 0.145177
Target:  5'- cCGGCUGACGCCAAGGacgaccgCGGCaacagcuGCCCGa -3'
miRNA:   3'- -GCCGGCUGCGGUUCUg------GCCG-------CGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.