Results 41 - 60 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 14778 | 0.75 | 0.10948 |
Target: 5'- -cGCgGACGCCcuggccauccugAAGGCUGGCGCCCAg -3' miRNA: 3'- gcCGgCUGCGG------------UUCUGGCCGCGGGUg -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 7264 | 0.75 | 0.096013 |
Target: 5'- gCGGCCGuccaccucgGCGCCGAGugCGcCGCCUGCg -3' miRNA: 3'- -GCCGGC---------UGCGGUUCugGCcGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 50974 | 0.78 | 0.059441 |
Target: 5'- -cGCCGACGCCAAGcgucaauggaacACCGGCGUCgACg -3' miRNA: 3'- gcCGGCUGCGGUUC------------UGGCCGCGGgUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 58432 | 1.09 | 0.000283 |
Target: 5'- gCGGCCGACGCCAAGACCGGCGCCCACg -3' miRNA: 3'- -GCCGGCUGCGGUUCUGGCCGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 9088 | 0.7 | 0.222763 |
Target: 5'- uGGCCG-CGUCGucACCGGCGCCg-- -3' miRNA: 3'- gCCGGCuGCGGUucUGGCCGCGGgug -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 14400 | 0.7 | 0.222763 |
Target: 5'- -cGCCGACGCCAAGcGCaagcaGGCGgCCGa -3' miRNA: 3'- gcCGGCUGCGGUUC-UGg----CCGCgGGUg -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 17288 | 0.7 | 0.233851 |
Target: 5'- cCGGagaCGACGCCcugcuGGCgCGcGUGCCCGCg -3' miRNA: 3'- -GCCg--GCUGCGGuu---CUG-GC-CGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 32136 | 0.68 | 0.317486 |
Target: 5'- gCGGCCcACGCCAAcGACCaGCuggaCCGCg -3' miRNA: 3'- -GCCGGcUGCGGUU-CUGGcCGcg--GGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 50079 | 0.68 | 0.317486 |
Target: 5'- gGGUCGACGuCCAGGACUacaaGGaCGgCUACa -3' miRNA: 3'- gCCGGCUGC-GGUUCUGG----CC-GCgGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 15380 | 0.68 | 0.31032 |
Target: 5'- -cGCCGACGCCAuccAGAaCGGCacccuGUCCGCc -3' miRNA: 3'- gcCGGCUGCGGU---UCUgGCCG-----CGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 17824 | 0.68 | 0.303278 |
Target: 5'- gCGGCCG-CGCaAGGcACCGGC-CUCACc -3' miRNA: 3'- -GCCGGCuGCGgUUC-UGGCCGcGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 40459 | 0.68 | 0.289563 |
Target: 5'- gCGGCCGAugacauugaaCGCCGcGGCCGaCGCcgCCACg -3' miRNA: 3'- -GCCGGCU----------GCGGUuCUGGCcGCG--GGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 8911 | 0.68 | 0.289563 |
Target: 5'- uGGCUGGCGgCGGGuaccCCGGCGUCaACg -3' miRNA: 3'- gCCGGCUGCgGUUCu---GGCCGCGGgUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 65130 | 0.69 | 0.282891 |
Target: 5'- aCGGCCGccacaacuaccGCGUCu---CCGGUGUCCGCg -3' miRNA: 3'- -GCCGGC-----------UGCGGuucuGGCCGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 38799 | 0.69 | 0.282891 |
Target: 5'- gGGCCGcgcgcaagucCGCCGAGACCauccGgGCCUACg -3' miRNA: 3'- gCCGGCu---------GCGGUUCUGGc---CgCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 18737 | 0.69 | 0.282891 |
Target: 5'- gGGCgaCGGCGgCGAGGCCGcGCGUgacaCCGCa -3' miRNA: 3'- gCCG--GCUGCgGUUCUGGC-CGCG----GGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 56209 | 0.69 | 0.27634 |
Target: 5'- uGaGUCgGugGCCuGGACCGGCGUCgACc -3' miRNA: 3'- gC-CGG-CugCGGuUCUGGCCGCGGgUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 2294 | 0.69 | 0.269912 |
Target: 5'- gCGGCuacacccuCGAUGacaucgaaugcaCCGAGGUCGGCGCCCACu -3' miRNA: 3'- -GCCG--------GCUGC------------GGUUCUGGCCGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 7213 | 0.69 | 0.269912 |
Target: 5'- gCGGCCGGUGCCGGuaaCGGCGacaCCGCg -3' miRNA: 3'- -GCCGGCUGCGGUUcugGCCGCg--GGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 58984 | 0.69 | 0.257417 |
Target: 5'- aGGCCGcccaggUGCUcgAAGACCucgugggggagGGCGCCCACc -3' miRNA: 3'- gCCGGCu-----GCGG--UUCUGG-----------CCGCGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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