Results 61 - 80 of 109 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 58738 | 0.7 | 0.239567 |
Target: 5'- gCGGCCGugGCgCAGGACaccuugaGGgGCCgAg -3' miRNA: 3'- -GCCGGCugCG-GUUCUGg------CCgCGGgUg -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 51874 | 0.7 | 0.245399 |
Target: 5'- gCGGCCuuggagauGAUGUUcAGACCGGCguuacucuuGCCCGCg -3' miRNA: 3'- -GCCGG--------CUGCGGuUCUGGCCG---------CGGGUG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 17943 | 0.7 | 0.245399 |
Target: 5'- -cGCCGggGCGCCcggguugguGAGGCCGGUGCCUugcGCg -3' miRNA: 3'- gcCGGC--UGCGG---------UUCUGGCCGCGGG---UG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 12094 | 0.69 | 0.263604 |
Target: 5'- uCGGCUugGugGCCuuguAGccAgCGGUGCCCACg -3' miRNA: 3'- -GCCGG--CugCGGu---UC--UgGCCGCGGGUG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 44483 | 0.69 | 0.269912 |
Target: 5'- aGGgUGAguUGCCcGGACgGGCGCCCGu -3' miRNA: 3'- gCCgGCU--GCGGuUCUGgCCGCGGGUg -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 6483 | 0.69 | 0.270549 |
Target: 5'- gGGCCuccucccccucgacaGCGCCAucGGGCgUGGCGCCCAa -3' miRNA: 3'- gCCGGc--------------UGCGGU--UCUG-GCCGCGGGUg -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 16496 | 0.69 | 0.272469 |
Target: 5'- uGGCCuggucacccuuggagGugGCCGAGGCaacccacuUGGCGCCCuCg -3' miRNA: 3'- gCCGG---------------CugCGGUUCUG--------GCCGCGGGuG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 42122 | 0.69 | 0.282891 |
Target: 5'- aGGuuGGCGCgcaCGAGGuuGGCGUCgACa -3' miRNA: 3'- gCCggCUGCG---GUUCUggCCGCGGgUG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 33454 | 0.69 | 0.282891 |
Target: 5'- gCGGCCGGucucaGCCAgcgugaugugcGGGCgGGUGCCCu- -3' miRNA: 3'- -GCCGGCUg----CGGU-----------UCUGgCCGCGGGug -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 65888 | 0.7 | 0.217388 |
Target: 5'- gCGGCCGAgGCCGAGA-CGGaCGaacuCCGCc -3' miRNA: 3'- -GCCGGCUgCGGUUCUgGCC-GCg---GGUG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 25779 | 0.7 | 0.217388 |
Target: 5'- aGGCCGACGCCu-GGCCc-CGCCCc- -3' miRNA: 3'- gCCGGCUGCGGuuCUGGccGCGGGug -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 25301 | 0.66 | 0.430574 |
Target: 5'- gCGGUCGcCGCCGuuGCCaGCGCCg-- -3' miRNA: 3'- -GCCGGCuGCGGUucUGGcCGCGGgug -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 45696 | 0.73 | 0.139698 |
Target: 5'- uGGCCGACGCgGAGgaggcACCGGCcaccuugcgggcgauGUCCACc -3' miRNA: 3'- gCCGGCUGCGgUUC-----UGGCCG---------------CGGGUG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 40076 | 0.73 | 0.14555 |
Target: 5'- aGGCCGA-GCCGGugaguuGAcCCGGCGCCgACg -3' miRNA: 3'- gCCGGCUgCGGUU------CU-GGCCGCGGgUG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 22396 | 0.72 | 0.165303 |
Target: 5'- gGGCUcacccuGCGCCAugacGGGCagGGCGCCCACg -3' miRNA: 3'- gCCGGc-----UGCGGU----UCUGg-CCGCGGGUG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 18202 | 0.72 | 0.169532 |
Target: 5'- uGGCCGgggGCGCCGAuGCCGGggaugccgaUGCCCAUa -3' miRNA: 3'- gCCGGC---UGCGGUUcUGGCC---------GCGGGUG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 24925 | 0.72 | 0.173421 |
Target: 5'- -cGCCGACGCCGAugaggucGACCGcGUugGCCCAUg -3' miRNA: 3'- gcCGGCUGCGGUU-------CUGGC-CG--CGGGUG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 24191 | 0.71 | 0.192158 |
Target: 5'- aGGCUGGCGCCGGaACCuuGCugGCCCACg -3' miRNA: 3'- gCCGGCUGCGGUUcUGGc-CG--CGGGUG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 14896 | 0.71 | 0.201927 |
Target: 5'- gGGCCagcugGGCGCCAGccuucaggauGGCCagGGCGUCCGCg -3' miRNA: 3'- gCCGG-----CUGCGGUU----------CUGG--CCGCGGGUG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 56075 | 0.71 | 0.206972 |
Target: 5'- gGGCCuGGCaGCCGAGcACCGGCaCCC-Cg -3' miRNA: 3'- gCCGG-CUG-CGGUUC-UGGCCGcGGGuG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home