miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 994 0.75 0.106652
Target:  5'- aGGCgGACGCCAGGG-CGGCuuCCCGCu -3'
miRNA:   3'- gCCGgCUGCGGUUCUgGCCGc-GGGUG- -5'
18506 3' -63.2 NC_004681.1 + 16496 0.69 0.272469
Target:  5'- uGGCCuggucacccuuggagGugGCCGAGGCaacccacuUGGCGCCCuCg -3'
miRNA:   3'- gCCGG---------------CugCGGUUCUG--------GCCGCGGGuG- -5'
18506 3' -63.2 NC_004681.1 + 33454 0.69 0.282891
Target:  5'- gCGGCCGGucucaGCCAgcgugaugugcGGGCgGGUGCCCu- -3'
miRNA:   3'- -GCCGGCUg----CGGU-----------UCUGgCCGCGGGug -5'
18506 3' -63.2 NC_004681.1 + 25301 0.66 0.430574
Target:  5'- gCGGUCGcCGCCGuuGCCaGCGCCg-- -3'
miRNA:   3'- -GCCGGCuGCGGUucUGGcCGCGGgug -5'
18506 3' -63.2 NC_004681.1 + 18202 0.72 0.169532
Target:  5'- uGGCCGgggGCGCCGAuGCCGGggaugccgaUGCCCAUa -3'
miRNA:   3'- gCCGGC---UGCGGUUcUGGCC---------GCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 24925 0.72 0.173421
Target:  5'- -cGCCGACGCCGAugaggucGACCGcGUugGCCCAUg -3'
miRNA:   3'- gcCGGCUGCGGUU-------CUGGC-CG--CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 14896 0.71 0.201927
Target:  5'- gGGCCagcugGGCGCCAGccuucaggauGGCCagGGCGUCCGCg -3'
miRNA:   3'- gCCGG-----CUGCGGUU----------CUGG--CCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 56075 0.71 0.206972
Target:  5'- gGGCCuGGCaGCCGAGcACCGGCaCCC-Cg -3'
miRNA:   3'- gCCGG-CUG-CGGUUC-UGGCCGcGGGuG- -5'
18506 3' -63.2 NC_004681.1 + 58738 0.7 0.239567
Target:  5'- gCGGCCGugGCgCAGGACaccuugaGGgGCCgAg -3'
miRNA:   3'- -GCCGGCugCG-GUUCUGg------CCgCGGgUg -5'
18506 3' -63.2 NC_004681.1 + 6483 0.69 0.270549
Target:  5'- gGGCCuccucccccucgacaGCGCCAucGGGCgUGGCGCCCAa -3'
miRNA:   3'- gCCGGc--------------UGCGGU--UCUG-GCCGCGGGUg -5'
18506 3' -63.2 NC_004681.1 + 17943 0.7 0.245399
Target:  5'- -cGCCGggGCGCCcggguugguGAGGCCGGUGCCUugcGCg -3'
miRNA:   3'- gcCGGC--UGCGG---------UUCUGGCCGCGGG---UG- -5'
18506 3' -63.2 NC_004681.1 + 65888 0.7 0.217388
Target:  5'- gCGGCCGAgGCCGAGA-CGGaCGaacuCCGCc -3'
miRNA:   3'- -GCCGGCUgCGGUUCUgGCC-GCg---GGUG- -5'
18506 3' -63.2 NC_004681.1 + 45696 0.73 0.139698
Target:  5'- uGGCCGACGCgGAGgaggcACCGGCcaccuugcgggcgauGUCCACc -3'
miRNA:   3'- gCCGGCUGCGgUUC-----UGGCCG---------------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 12094 0.69 0.263604
Target:  5'- uCGGCUugGugGCCuuguAGccAgCGGUGCCCACg -3'
miRNA:   3'- -GCCGG--CugCGGu---UC--UgGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 40076 0.73 0.14555
Target:  5'- aGGCCGA-GCCGGugaguuGAcCCGGCGCCgACg -3'
miRNA:   3'- gCCGGCUgCGGUU------CU-GGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 25779 0.7 0.217388
Target:  5'- aGGCCGACGCCu-GGCCc-CGCCCc- -3'
miRNA:   3'- gCCGGCUGCGGuuCUGGccGCGGGug -5'
18506 3' -63.2 NC_004681.1 + 44483 0.69 0.269912
Target:  5'- aGGgUGAguUGCCcGGACgGGCGCCCGu -3'
miRNA:   3'- gCCgGCU--GCGGuUCUGgCCGCGGGUg -5'
18506 3' -63.2 NC_004681.1 + 42122 0.69 0.282891
Target:  5'- aGGuuGGCGCgcaCGAGGuuGGCGUCgACa -3'
miRNA:   3'- gCCggCUGCG---GUUCUggCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 22396 0.72 0.165303
Target:  5'- gGGCUcacccuGCGCCAugacGGGCagGGCGCCCACg -3'
miRNA:   3'- gCCGGc-----UGCGGU----UCUGg-CCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 24191 0.71 0.192158
Target:  5'- aGGCUGGCGCCGGaACCuuGCugGCCCACg -3'
miRNA:   3'- gCCGGCUGCGGUUcUGGc-CG--CGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.