miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 32116 0.68 0.296359
Target:  5'- cCGGCCG-UGCCGAcACCcgcGGCGCCgAUc -3'
miRNA:   3'- -GCCGGCuGCGGUUcUGG---CCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 33454 0.69 0.282891
Target:  5'- gCGGCCGGucucaGCCAgcgugaugugcGGGCgGGUGCCCu- -3'
miRNA:   3'- -GCCGGCUg----CGGU-----------UCUGgCCGCGGGug -5'
18506 3' -63.2 NC_004681.1 + 65888 0.7 0.217388
Target:  5'- gCGGCCGAgGCCGAGA-CGGaCGaacuCCGCc -3'
miRNA:   3'- -GCCGGCUgCGGUUCUgGCC-GCg---GGUG- -5'
18506 3' -63.2 NC_004681.1 + 22396 0.72 0.165303
Target:  5'- gGGCUcacccuGCGCCAugacGGGCagGGCGCCCACg -3'
miRNA:   3'- gCCGGc-----UGCGGU----UCUGg-CCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 9603 0.67 0.363076
Target:  5'- aGGCCGAgGCgCucu-UCGGCGCgCACg -3'
miRNA:   3'- gCCGGCUgCG-GuucuGGCCGCGgGUG- -5'
18506 3' -63.2 NC_004681.1 + 63538 0.68 0.33219
Target:  5'- cCGGCCGAgGCUggAAGcCUGGUGgCCAg -3'
miRNA:   3'- -GCCGGCUgCGG--UUCuGGCCGCgGGUg -5'
18506 3' -63.2 NC_004681.1 + 16496 0.69 0.272469
Target:  5'- uGGCCuggucacccuuggagGugGCCGAGGCaacccacuUGGCGCCCuCg -3'
miRNA:   3'- gCCGG---------------CugCGGUUCUG--------GCCGCGGGuG- -5'
18506 3' -63.2 NC_004681.1 + 40076 0.73 0.14555
Target:  5'- aGGCCGA-GCCGGugaguuGAcCCGGCGCCgACg -3'
miRNA:   3'- gCCGGCUgCGGUU------CU-GGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 70933 0.68 0.331443
Target:  5'- gCGGCCGcugaGCGUgGAGACCgugacacGGUGCgCGCu -3'
miRNA:   3'- -GCCGGC----UGCGgUUCUGG-------CCGCGgGUG- -5'
18506 3' -63.2 NC_004681.1 + 45696 0.73 0.139698
Target:  5'- uGGCCGACGCgGAGgaggcACCGGCcaccuugcgggcgauGUCCACc -3'
miRNA:   3'- gCCGGCUGCGgUUC-----UGGCCG---------------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 42122 0.69 0.282891
Target:  5'- aGGuuGGCGCgcaCGAGGuuGGCGUCgACa -3'
miRNA:   3'- gCCggCUGCG---GUUCUggCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 16633 0.68 0.303278
Target:  5'- aCGGCCGcCGUgGGGACCGuuGCCgcCACc -3'
miRNA:   3'- -GCCGGCuGCGgUUCUGGCcgCGG--GUG- -5'
18506 3' -63.2 NC_004681.1 + 12094 0.69 0.263604
Target:  5'- uCGGCUugGugGCCuuguAGccAgCGGUGCCCACg -3'
miRNA:   3'- -GCCGG--CugCGGu---UC--UgGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 58738 0.7 0.239567
Target:  5'- gCGGCCGugGCgCAGGACaccuugaGGgGCCgAg -3'
miRNA:   3'- -GCCGGCugCG-GUUCUGg------CCgCGGgUg -5'
18506 3' -63.2 NC_004681.1 + 14896 0.71 0.201927
Target:  5'- gGGCCagcugGGCGCCAGccuucaggauGGCCagGGCGUCCGCg -3'
miRNA:   3'- gCCGG-----CUGCGGUU----------CUGG--CCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 18202 0.72 0.169532
Target:  5'- uGGCCGgggGCGCCGAuGCCGGggaugccgaUGCCCAUa -3'
miRNA:   3'- gCCGGC---UGCGGUUcUGGCC---------GCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 22821 0.66 0.386683
Target:  5'- gCGGCCG-UGCCGguguucuGGGUCuGUGCCCACa -3'
miRNA:   3'- -GCCGGCuGCGGU-------UCUGGcCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 65029 0.67 0.371102
Target:  5'- aGGCgCGuCGCCAccucgugcuccAGGCgGGCGCCgCGg -3'
miRNA:   3'- gCCG-GCuGCGGU-----------UCUGgCCGCGG-GUg -5'
18506 3' -63.2 NC_004681.1 + 16143 0.67 0.347388
Target:  5'- gCGGCgGAUGCgGuGACagcggCGGCGCCCu- -3'
miRNA:   3'- -GCCGgCUGCGgUuCUG-----GCCGCGGGug -5'
18506 3' -63.2 NC_004681.1 + 10310 0.67 0.347388
Target:  5'- gGaGCCaGgGCCAGGugugGCCGGUGCuCCACu -3'
miRNA:   3'- gC-CGGcUgCGGUUC----UGGCCGCG-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.