miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 51874 0.7 0.245399
Target:  5'- gCGGCCuuggagauGAUGUUcAGACCGGCguuacucuuGCCCGCg -3'
miRNA:   3'- -GCCGG--------CUGCGGuUCUGGCCG---------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 25021 0.66 0.404398
Target:  5'- -aGUCGACGCCGcgcagaAGGgUGGCagcuGCCCACu -3'
miRNA:   3'- gcCGGCUGCGGU------UCUgGCCG----CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 17562 0.67 0.371102
Target:  5'- aGGCaCGAaGCCAuGAUCGGUGagCCACu -3'
miRNA:   3'- gCCG-GCUgCGGUuCUGGCCGCg-GGUG- -5'
18506 3' -63.2 NC_004681.1 + 18072 0.67 0.347388
Target:  5'- gCGGgaGugGCCGcauGGGCugCGGgGCCCACc -3'
miRNA:   3'- -GCCggCugCGGU---UCUG--GCCgCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 63538 0.68 0.33219
Target:  5'- cCGGCCGAgGCUggAAGcCUGGUGgCCAg -3'
miRNA:   3'- -GCCGGCUgCGG--UUCuGGCCGCgGGUg -5'
18506 3' -63.2 NC_004681.1 + 16633 0.68 0.303278
Target:  5'- aCGGCCGcCGUgGGGACCGuuGCCgcCACc -3'
miRNA:   3'- -GCCGGCuGCGgUUCUGGCcgCGG--GUG- -5'
18506 3' -63.2 NC_004681.1 + 22491 0.69 0.282891
Target:  5'- gCGGCCGGgGU---GACCaGCGUCCACu -3'
miRNA:   3'- -GCCGGCUgCGguuCUGGcCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 45696 0.73 0.139698
Target:  5'- uGGCCGACGCgGAGgaggcACCGGCcaccuugcgggcgauGUCCACc -3'
miRNA:   3'- gCCGGCUGCGgUUC-----UGGCCG---------------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 44483 0.69 0.269912
Target:  5'- aGGgUGAguUGCCcGGACgGGCGCCCGu -3'
miRNA:   3'- gCCgGCU--GCGGuUCUGgCCGCGGGUg -5'
18506 3' -63.2 NC_004681.1 + 55995 0.68 0.33219
Target:  5'- aGGCCcucacgcagcgcGACGCCAAGGagGGCGaccuCCGCa -3'
miRNA:   3'- gCCGG------------CUGCGGUUCUggCCGCg---GGUG- -5'
18506 3' -63.2 NC_004681.1 + 35396 0.66 0.430574
Target:  5'- uGGCCGGauuCCucGACgGGCaCCCACu -3'
miRNA:   3'- gCCGGCUgc-GGuuCUGgCCGcGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 18364 0.66 0.421737
Target:  5'- cCGG-UGGCGCCAucgacauggcAGGCCaggcGGCGgCCGCg -3'
miRNA:   3'- -GCCgGCUGCGGU----------UCUGG----CCGCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 40386 0.66 0.421737
Target:  5'- gCGGCac-CGCCAGcguGGCCGGUGUcuCCACc -3'
miRNA:   3'- -GCCGgcuGCGGUU---CUGGCCGCG--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 47238 0.66 0.413012
Target:  5'- -cGCCGACaaUGAGACCauccGCGCCUACa -3'
miRNA:   3'- gcCGGCUGcgGUUCUGGc---CGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 67697 0.66 0.413012
Target:  5'- uCGGCacCGACGaCAAGggccGCUGGCGCuaCCGCa -3'
miRNA:   3'- -GCCG--GCUGCgGUUC----UGGCCGCG--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 50079 0.68 0.317486
Target:  5'- gGGUCGACGuCCAGGACUacaaGGaCGgCUACa -3'
miRNA:   3'- gCCGGCUGC-GGUUCUGG----CC-GCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 30166 0.68 0.33219
Target:  5'- gCGGCCGcggaguggaccuACGCCAAGAacccugaCGGCaCCgACa -3'
miRNA:   3'- -GCCGGC------------UGCGGUUCUg------GCCGcGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 14400 0.7 0.222763
Target:  5'- -cGCCGACGCCAAGcGCaagcaGGCGgCCGa -3'
miRNA:   3'- gcCGGCUGCGGUUC-UGg----CCGCgGGUg -5'
18506 3' -63.2 NC_004681.1 + 9088 0.7 0.222763
Target:  5'- uGGCCG-CGUCGucACCGGCGCCg-- -3'
miRNA:   3'- gCCGGCuGCGGUucUGGCCGCGGgug -5'
18506 3' -63.2 NC_004681.1 + 46731 0.74 0.126984
Target:  5'- gCGGCauCGACGCUgucaugaacgugguGGGACCGGCGCUgCGCg -3'
miRNA:   3'- -GCCG--GCUGCGG--------------UUCUGGCCGCGG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.