miRNA display CGI


Results 61 - 80 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 33475 0.66 0.387515
Target:  5'- uGGCCGugGCUGAucCUGGUGgCCGu -3'
miRNA:   3'- gCCGGCugCGGUUcuGGCCGCgGGUg -5'
18506 3' -63.2 NC_004681.1 + 5204 0.66 0.387515
Target:  5'- uGGCCGAgcuguCGCCAcagaugcaGGACUccuacuacuacGCGCCCGCu -3'
miRNA:   3'- gCCGGCU-----GCGGU--------UCUGGc----------CGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 65130 0.69 0.282891
Target:  5'- aCGGCCGccacaacuaccGCGUCu---CCGGUGUCCGCg -3'
miRNA:   3'- -GCCGGC-----------UGCGGuucuGGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 8911 0.68 0.289563
Target:  5'- uGGCUGGCGgCGGGuaccCCGGCGUCaACg -3'
miRNA:   3'- gCCGGCUGCgGUUCu---GGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 40459 0.68 0.289563
Target:  5'- gCGGCCGAugacauugaaCGCCGcGGCCGaCGCcgCCACg -3'
miRNA:   3'- -GCCGGCU----------GCGGUuCUGGCcGCG--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 17824 0.68 0.303278
Target:  5'- gCGGCCG-CGCaAGGcACCGGC-CUCACc -3'
miRNA:   3'- -GCCGGCuGCGgUUC-UGGCCGcGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 15380 0.68 0.31032
Target:  5'- -cGCCGACGCCAuccAGAaCGGCacccuGUCCGCc -3'
miRNA:   3'- gcCGGCUGCGGU---UCUgGCCG-----CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 50079 0.68 0.317486
Target:  5'- gGGUCGACGuCCAGGACUacaaGGaCGgCUACa -3'
miRNA:   3'- gCCGGCUGC-GGUUCUGG----CC-GCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 32136 0.68 0.317486
Target:  5'- gCGGCCcACGCCAAcGACCaGCuggaCCGCg -3'
miRNA:   3'- -GCCGGcUGCGGUU-CUGGcCGcg--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 27055 0.66 0.390854
Target:  5'- uGGUCGGCGUCGAGGgaccuacaaccaacuCCGGUcuuggcaccGUCCACu -3'
miRNA:   3'- gCCGGCUGCGGUUCU---------------GGCCG---------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 14572 0.66 0.395898
Target:  5'- aCGGCCGcaguCGCCuucGGcACCGGCaaGCUgGCu -3'
miRNA:   3'- -GCCGGCu---GCGGu--UC-UGGCCG--CGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 40386 0.66 0.421737
Target:  5'- gCGGCac-CGCCAGcguGGCCGGUGUcuCCACc -3'
miRNA:   3'- -GCCGgcuGCGGUU---CUGGCCGCG--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 47238 0.66 0.413012
Target:  5'- -cGCCGACaaUGAGACCauccGCGCCUACa -3'
miRNA:   3'- gcCGGCUGcgGUUCUGGc---CGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 67697 0.66 0.413012
Target:  5'- uCGGCacCGACGaCAAGggccGCUGGCGCuaCCGCa -3'
miRNA:   3'- -GCCG--GCUGCgGUUC----UGGCCGCG--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 29158 0.66 0.413012
Target:  5'- aCGGCC-ACGUCAAcGACCaaccccugGGCGgCCAUc -3'
miRNA:   3'- -GCCGGcUGCGGUU-CUGG--------CCGCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 61121 0.66 0.413012
Target:  5'- aGGCCGuCGCCAAcuucACCGucGUGUCCAa -3'
miRNA:   3'- gCCGGCuGCGGUUc---UGGC--CGCGGGUg -5'
18506 3' -63.2 NC_004681.1 + 426 0.66 0.412145
Target:  5'- cCGGUgGACGaCgAGGGCCuccgcugGGCGUCCAa -3'
miRNA:   3'- -GCCGgCUGC-GgUUCUGG-------CCGCGGGUg -5'
18506 3' -63.2 NC_004681.1 + 65967 0.66 0.404398
Target:  5'- aCGGCaCGAagGCCGAGAa-GGCuGCCgCGCa -3'
miRNA:   3'- -GCCG-GCUg-CGGUUCUggCCG-CGG-GUG- -5'
18506 3' -63.2 NC_004681.1 + 7826 0.66 0.404398
Target:  5'- aGGCCGgaACGCCAcaAGAuucaaCCGaagaauCGCCCGCu -3'
miRNA:   3'- gCCGGC--UGCGGU--UCU-----GGCc-----GCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 41056 0.66 0.395898
Target:  5'- aCGGCCcucuucGGCGCCGccGCCGauGUGCUCACc -3'
miRNA:   3'- -GCCGG------CUGCGGUucUGGC--CGCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.