Results 101 - 109 of 109 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 30260 | 0.67 | 0.338968 |
Target: 5'- gCGGCCGguacgGCGUCGAGACCaccgauccguGGUGaccugaaCCCACa -3' miRNA: 3'- -GCCGGC-----UGCGGUUCUGG----------CCGC-------GGGUG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 6403 | 0.67 | 0.339727 |
Target: 5'- aGGCCccGGCGCCGAagcGACCGGC-CagCACu -3' miRNA: 3'- gCCGG--CUGCGGUU---CUGGCCGcGg-GUG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 44158 | 0.67 | 0.339727 |
Target: 5'- cCGGCCG-CGaauaCGAGugCuacGGCGCCC-Ca -3' miRNA: 3'- -GCCGGCuGCg---GUUCugG---CCGCGGGuG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 66741 | 0.67 | 0.347388 |
Target: 5'- uGGCCaauGCGCagAAGGCCGGUggcaacgccGCCUACa -3' miRNA: 3'- gCCGGc--UGCGg-UUCUGGCCG---------CGGGUG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 40152 | 0.67 | 0.355171 |
Target: 5'- aGGCCgcGACGCCGcAGAUCgaGGCGaugagauagaCCCGCg -3' miRNA: 3'- gCCGG--CUGCGGU-UCUGG--CCGC----------GGGUG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 50369 | 0.67 | 0.355171 |
Target: 5'- gGGaCGugGUCGAGGgCGGCuaCCGCu -3' miRNA: 3'- gCCgGCugCGGUUCUgGCCGcgGGUG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 11776 | 0.67 | 0.355171 |
Target: 5'- uGGCCGcuuCuaCGAGAUCGGUGCCauCACc -3' miRNA: 3'- gCCGGCu--GcgGUUCUGGCCGCGG--GUG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 31241 | 0.67 | 0.355171 |
Target: 5'- gGGaCCGGCGCCGAGugUuuGGCuaCgGCa -3' miRNA: 3'- gCC-GGCUGCGGUUCugG--CCGcgGgUG- -5' |
|||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 29158 | 0.66 | 0.413012 |
Target: 5'- aCGGCC-ACGUCAAcGACCaaccccugGGCGgCCAUc -3' miRNA: 3'- -GCCGGcUGCGGUU-CUGG--------CCGCgGGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home