miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 5' -57.3 NC_004681.1 + 1548 0.66 0.66382
Target:  5'- cCAGCcuuCAGCUGGGCGgCGgGgGAGa -3'
miRNA:   3'- -GUUGcuuGUCGACCCGCgGCgCaCUU- -5'
18506 5' -57.3 NC_004681.1 + 62393 0.66 0.657371
Target:  5'- cCGGCGAcauccggguacuggcAUGGCUGGGCGCCGaCa---- -3'
miRNA:   3'- -GUUGCU---------------UGUCGACCCGCGGC-Gcacuu -5'
18506 5' -57.3 NC_004681.1 + 42337 0.66 0.631516
Target:  5'- gGACcAGCAGCUcGGCgGCCGUGUGc- -3'
miRNA:   3'- gUUGcUUGUCGAcCCG-CGGCGCACuu -5'
18506 5' -57.3 NC_004681.1 + 48659 0.67 0.60674
Target:  5'- aCGAUGcAGCagGGCUGGGUGCUGCcgucgcgcucgaccGUGAAg -3'
miRNA:   3'- -GUUGC-UUG--UCGACCCGCGGCG--------------CACUU- -5'
18506 5' -57.3 NC_004681.1 + 44529 0.67 0.567156
Target:  5'- cCAGCcAGCcacGCUGGGCGCgCGCGUc-- -3'
miRNA:   3'- -GUUGcUUGu--CGACCCGCG-GCGCAcuu -5'
18506 5' -57.3 NC_004681.1 + 16203 0.68 0.525147
Target:  5'- aCAGCcguGGCGGCUGuGcGCGCCGCGgUGGu -3'
miRNA:   3'- -GUUGc--UUGUCGAC-C-CGCGGCGC-ACUu -5'
18506 5' -57.3 NC_004681.1 + 14899 0.69 0.49443
Target:  5'- -uACGGGcCAGCUGGGCGCCaGCc---- -3'
miRNA:   3'- guUGCUU-GUCGACCCGCGG-CGcacuu -5'
18506 5' -57.3 NC_004681.1 + 19595 0.7 0.435654
Target:  5'- uCAACGAGCu-CUGGGCGCgcugcgGCGUGGu -3'
miRNA:   3'- -GUUGCUUGucGACCCGCGg-----CGCACUu -5'
18506 5' -57.3 NC_004681.1 + 3225 0.71 0.372481
Target:  5'- gGGCGAGCcGCUGGGCG-CGCGa--- -3'
miRNA:   3'- gUUGCUUGuCGACCCGCgGCGCacuu -5'
18506 5' -57.3 NC_004681.1 + 70520 0.71 0.347382
Target:  5'- aGACGAugACAGCUGucgcGCGCgCGCGUGGc -3'
miRNA:   3'- gUUGCU--UGUCGACc---CGCG-GCGCACUu -5'
18506 5' -57.3 NC_004681.1 + 13881 0.72 0.308294
Target:  5'- gGACG-ACAGCUuggGGGCGCCGUccuugcgcuugGUGAAg -3'
miRNA:   3'- gUUGCuUGUCGA---CCCGCGGCG-----------CACUU- -5'
18506 5' -57.3 NC_004681.1 + 58469 1.05 0.001535
Target:  5'- uCAACGAACAGCUGGGCGCCGCGUGAAc -3'
miRNA:   3'- -GUUGCUUGUCGACCCGCGGCGCACUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.