miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18507 3' -53.4 NC_004681.1 + 26727 0.66 0.90461
Target:  5'- -cGGUAAGCCcgCC-CCggccaaCCUCGGCUa -3'
miRNA:   3'- gcUCGUUUGGuaGGuGGa-----GGAGCUGG- -5'
18507 3' -53.4 NC_004681.1 + 35481 0.66 0.90461
Target:  5'- uGuGUAcGCCGUCgC-CUUCCUcCGACCa -3'
miRNA:   3'- gCuCGUuUGGUAG-GuGGAGGA-GCUGG- -5'
18507 3' -53.4 NC_004681.1 + 39313 0.66 0.90461
Target:  5'- uGAGCuGACaGUCgACCaggcugacgUCCUCGACg -3'
miRNA:   3'- gCUCGuUUGgUAGgUGG---------AGGAGCUGg -5'
18507 3' -53.4 NC_004681.1 + 56797 0.66 0.90461
Target:  5'- cCGGGuCGcccacaucaacAAUCAgggCCACCUCUcCGACCu -3'
miRNA:   3'- -GCUC-GU-----------UUGGUa--GGUGGAGGaGCUGG- -5'
18507 3' -53.4 NC_004681.1 + 12472 0.66 0.897887
Target:  5'- aCGAGCGGuUCGUaCACCUUCaaggUGACCg -3'
miRNA:   3'- -GCUCGUUuGGUAgGUGGAGGa---GCUGG- -5'
18507 3' -53.4 NC_004681.1 + 41858 0.66 0.897887
Target:  5'- gGAGCcGACCuGUCCcacGCCUaCCUCGcaggugucaACCu -3'
miRNA:   3'- gCUCGuUUGG-UAGG---UGGA-GGAGC---------UGG- -5'
18507 3' -53.4 NC_004681.1 + 69341 0.66 0.897887
Target:  5'- aGAGCAAgacACCAUCguCC-CCaguaUCGACg -3'
miRNA:   3'- gCUCGUU---UGGUAGguGGaGG----AGCUGg -5'
18507 3' -53.4 NC_004681.1 + 1773 0.66 0.897887
Target:  5'- ---cCAGGCCAUCgC-CCUCCUC-ACCg -3'
miRNA:   3'- gcucGUUUGGUAG-GuGGAGGAGcUGG- -5'
18507 3' -53.4 NC_004681.1 + 15253 0.66 0.897887
Target:  5'- cCGAGCAGACCGgcgauUUCACgCUgCg-GGCCg -3'
miRNA:   3'- -GCUCGUUUGGU-----AGGUG-GAgGagCUGG- -5'
18507 3' -53.4 NC_004681.1 + 40315 0.66 0.897887
Target:  5'- cCGcGC-AACCGUCaagcuCCUCCaCGACCc -3'
miRNA:   3'- -GCuCGuUUGGUAGgu---GGAGGaGCUGG- -5'
18507 3' -53.4 NC_004681.1 + 59257 0.66 0.897887
Target:  5'- gCGAcGUAGguGCCGUCC-CgCUUCUCGGCg -3'
miRNA:   3'- -GCU-CGUU--UGGUAGGuG-GAGGAGCUGg -5'
18507 3' -53.4 NC_004681.1 + 52101 0.66 0.897887
Target:  5'- -cAGCGGGaga-CCACUUCCUCGACa -3'
miRNA:   3'- gcUCGUUUgguaGGUGGAGGAGCUGg -5'
18507 3' -53.4 NC_004681.1 + 8460 0.66 0.890906
Target:  5'- cCGcGCGAGCCAgaugcuugcgaaUCUGCUUcagguugcggaCCUCGACCu -3'
miRNA:   3'- -GCuCGUUUGGU------------AGGUGGA-----------GGAGCUGG- -5'
18507 3' -53.4 NC_004681.1 + 39681 0.66 0.890906
Target:  5'- uCGGuCGAAuUCGUCCGaugcgagCUCCUCGGCCg -3'
miRNA:   3'- -GCUcGUUU-GGUAGGUg------GAGGAGCUGG- -5'
18507 3' -53.4 NC_004681.1 + 68229 0.66 0.890906
Target:  5'- aGAGCAAcGCCG-CCACgguCUCaUCGACUa -3'
miRNA:   3'- gCUCGUU-UGGUaGGUG---GAGgAGCUGG- -5'
18507 3' -53.4 NC_004681.1 + 50503 0.66 0.890906
Target:  5'- -cAGCAGAUCGaaaGCCUCCU-GACCg -3'
miRNA:   3'- gcUCGUUUGGUaggUGGAGGAgCUGG- -5'
18507 3' -53.4 NC_004681.1 + 14769 0.66 0.890906
Target:  5'- -aAGCAGGCCGUCCuggAgCUUCUUGAgCu -3'
miRNA:   3'- gcUCGUUUGGUAGG---UgGAGGAGCUgG- -5'
18507 3' -53.4 NC_004681.1 + 13621 0.66 0.888762
Target:  5'- gGAGCGAACCAcggcgggagggcacUCCACg-CCgUUGAUCu -3'
miRNA:   3'- gCUCGUUUGGU--------------AGGUGgaGG-AGCUGG- -5'
18507 3' -53.4 NC_004681.1 + 61565 0.66 0.886595
Target:  5'- uGAGCAAAUCAUggCCcCCUCCgaacaaggaagcacaUUGACUg -3'
miRNA:   3'- gCUCGUUUGGUA--GGuGGAGG---------------AGCUGG- -5'
18507 3' -53.4 NC_004681.1 + 27203 0.66 0.883671
Target:  5'- cCGGGCGAaguacACCGgcgucgcgCC-CCUCCU-GGCCg -3'
miRNA:   3'- -GCUCGUU-----UGGUa-------GGuGGAGGAgCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.