miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18507 5' -52 NC_004681.1 + 19416 0.66 0.942041
Target:  5'- -cGACGAGGACG-C-AGGcguCUGCgGCa -3'
miRNA:   3'- gaCUGCUCCUGUaGcUCCu--GAUGaCG- -5'
18507 5' -52 NC_004681.1 + 51749 0.66 0.942041
Target:  5'- -gGugGGGauGACGUCgGAGGGCUGgucUUGCc -3'
miRNA:   3'- gaCugCUC--CUGUAG-CUCCUGAU---GACG- -5'
18507 5' -52 NC_004681.1 + 50364 0.66 0.936995
Target:  5'- gCUGugGGacGugGUCGAGGgcgGCUACcGCu -3'
miRNA:   3'- -GACugCUc-CugUAGCUCC---UGAUGaCG- -5'
18507 5' -52 NC_004681.1 + 73559 0.66 0.931677
Target:  5'- aCUGuccuCGAGGACAaUGGuGGGC-AUUGCg -3'
miRNA:   3'- -GACu---GCUCCUGUaGCU-CCUGaUGACG- -5'
18507 5' -52 NC_004681.1 + 51295 0.66 0.926085
Target:  5'- gUGGCGuucuuGGagagaagcaugGCGcCGAGGACUGCUGa -3'
miRNA:   3'- gACUGCu----CC-----------UGUaGCUCCUGAUGACg -5'
18507 5' -52 NC_004681.1 + 39862 0.66 0.926085
Target:  5'- -gGGCGAGGuCuUCGGGGGucaUGCUGa -3'
miRNA:   3'- gaCUGCUCCuGuAGCUCCUg--AUGACg -5'
18507 5' -52 NC_004681.1 + 74403 0.66 0.92022
Target:  5'- gUGACcacGGACggUGAGGACUACgUGg -3'
miRNA:   3'- gACUGcu-CCUGuaGCUCCUGAUG-ACg -5'
18507 5' -52 NC_004681.1 + 69299 0.67 0.914708
Target:  5'- -gGACGAGcucgcaacugagcuCAUCGAGGACUACc-- -3'
miRNA:   3'- gaCUGCUCcu------------GUAGCUCCUGAUGacg -5'
18507 5' -52 NC_004681.1 + 48782 0.67 0.914082
Target:  5'- cCUGGagUGAGGcCGUCGAGGGCgcggGUg -3'
miRNA:   3'- -GACU--GCUCCuGUAGCUCCUGaugaCG- -5'
18507 5' -52 NC_004681.1 + 18393 0.67 0.907673
Target:  5'- gCUGACcgcca-GUCGAGGACUGCgGCc -3'
miRNA:   3'- -GACUGcuccugUAGCUCCUGAUGaCG- -5'
18507 5' -52 NC_004681.1 + 74063 0.67 0.907673
Target:  5'- gUGGCGGauggucacGGACGcUGAGGACUuGCUcGCg -3'
miRNA:   3'- gACUGCU--------CCUGUaGCUCCUGA-UGA-CG- -5'
18507 5' -52 NC_004681.1 + 55709 0.67 0.900995
Target:  5'- aUGACGGGGuCGU--AGGGCUucACUGUc -3'
miRNA:   3'- gACUGCUCCuGUAgcUCCUGA--UGACG- -5'
18507 5' -52 NC_004681.1 + 66646 0.67 0.89405
Target:  5'- -cGGCGcucuGGGCAUCGGGGGgUACccgagggGCc -3'
miRNA:   3'- gaCUGCu---CCUGUAGCUCCUgAUGa------CG- -5'
18507 5' -52 NC_004681.1 + 44738 0.67 0.89405
Target:  5'- -cGGCGccuucGACGUCGAGGACUcccucGCggGCg -3'
miRNA:   3'- gaCUGCuc---CUGUAGCUCCUGA-----UGa-CG- -5'
18507 5' -52 NC_004681.1 + 4045 0.68 0.87938
Target:  5'- -gGAgGAGGACccguggaaCGAGGAgUGCUGg -3'
miRNA:   3'- gaCUgCUCCUGua------GCUCCUgAUGACg -5'
18507 5' -52 NC_004681.1 + 47121 0.68 0.87938
Target:  5'- -cGACGAGaACGcCGAGGGCcgcgccgaACUGCg -3'
miRNA:   3'- gaCUGCUCcUGUaGCUCCUGa-------UGACG- -5'
18507 5' -52 NC_004681.1 + 22369 0.68 0.871665
Target:  5'- -cGGCGAGGACcuccccgacGUCGAguGGAC-GCUGg -3'
miRNA:   3'- gaCUGCUCCUG---------UAGCU--CCUGaUGACg -5'
18507 5' -52 NC_004681.1 + 48677 0.68 0.87088
Target:  5'- uCUG-CGAGGGCGUgGcccacgaugcagcAGGGCUggguGCUGCc -3'
miRNA:   3'- -GACuGCUCCUGUAgC-------------UCCUGA----UGACG- -5'
18507 5' -52 NC_004681.1 + 57783 0.68 0.863705
Target:  5'- uUGGcCGAGGauuGCGUCGAGcGCUGC-GCg -3'
miRNA:   3'- gACU-GCUCC---UGUAGCUCcUGAUGaCG- -5'
18507 5' -52 NC_004681.1 + 58970 0.68 0.854672
Target:  5'- gCUGGCGAGGAgGUgGAugguuugcucgugGGAgUGgUGCg -3'
miRNA:   3'- -GACUGCUCCUgUAgCU-------------CCUgAUgACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.