miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18507 5' -52 NC_004681.1 + 58901 1.12 0.002124
Target:  5'- gCUGACGAGGACAUCGAGGACUACUGCu -3'
miRNA:   3'- -GACUGCUCCUGUAGCUCCUGAUGACG- -5'
18507 5' -52 NC_004681.1 + 71686 0.79 0.298737
Target:  5'- --cGCGAGGACAUUgcaGAGGACUACguUGCg -3'
miRNA:   3'- gacUGCUCCUGUAG---CUCCUGAUG--ACG- -5'
18507 5' -52 NC_004681.1 + 6608 0.75 0.505144
Target:  5'- -cGGCaAGGACAUCaAGGGCUucgcGCUGCa -3'
miRNA:   3'- gaCUGcUCCUGUAGcUCCUGA----UGACG- -5'
18507 5' -52 NC_004681.1 + 10006 0.74 0.526033
Target:  5'- uCUGGuCGAGGACGacgucgccaUCGuGGACccgUACUGCg -3'
miRNA:   3'- -GACU-GCUCCUGU---------AGCuCCUG---AUGACG- -5'
18507 5' -52 NC_004681.1 + 24887 0.74 0.526033
Target:  5'- aUGGCGAGGGCggCGAccccggcaaguGGGCaGCUGCc -3'
miRNA:   3'- gACUGCUCCUGuaGCU-----------CCUGaUGACG- -5'
18507 5' -52 NC_004681.1 + 16682 0.74 0.54724
Target:  5'- -cGAcCGGGGACGcCGGGGGCUugUaGCg -3'
miRNA:   3'- gaCU-GCUCCUGUaGCUCCUGAugA-CG- -5'
18507 5' -52 NC_004681.1 + 11298 0.74 0.557945
Target:  5'- -gGugGGGGACAgggUGAGGuCUccgACUGCg -3'
miRNA:   3'- gaCugCUCCUGUa--GCUCCuGA---UGACG- -5'
18507 5' -52 NC_004681.1 + 40624 0.74 0.56871
Target:  5'- cCUGACc-GGGCAauacaaccUCGAGGACUACgucggGCa -3'
miRNA:   3'- -GACUGcuCCUGU--------AGCUCCUGAUGa----CG- -5'
18507 5' -52 NC_004681.1 + 53898 0.73 0.601276
Target:  5'- aUGGCGAGGugGgUGAGGAau-CUGCc -3'
miRNA:   3'- gACUGCUCCugUaGCUCCUgauGACG- -5'
18507 5' -52 NC_004681.1 + 66977 0.73 0.612195
Target:  5'- uUGACGAGGAgGUCaacgaucuccAGGGCUGCUcGCc -3'
miRNA:   3'- gACUGCUCCUgUAGc---------UCCUGAUGA-CG- -5'
18507 5' -52 NC_004681.1 + 28431 0.72 0.634076
Target:  5'- gUGACGAGGACAUCGuucgu--CUGCg -3'
miRNA:   3'- gACUGCUCCUGUAGCuccugauGACG- -5'
18507 5' -52 NC_004681.1 + 26886 0.72 0.677735
Target:  5'- -cGGCGAGGACAUgGAGcGC-AUUGCc -3'
miRNA:   3'- gaCUGCUCCUGUAgCUCcUGaUGACG- -5'
18507 5' -52 NC_004681.1 + 38997 0.71 0.699349
Target:  5'- -cGACGAGGAaggcgucaaCGUCGAcGGcCUGCUGg -3'
miRNA:   3'- gaCUGCUCCU---------GUAGCU-CCuGAUGACg -5'
18507 5' -52 NC_004681.1 + 21387 0.71 0.720706
Target:  5'- uCUGAUcaAGGACGUCGuGGACU--UGCa -3'
miRNA:   3'- -GACUGc-UCCUGUAGCuCCUGAugACG- -5'
18507 5' -52 NC_004681.1 + 39294 0.7 0.772378
Target:  5'- gCUGACGuccucGACGUCGAGGGCga--GCa -3'
miRNA:   3'- -GACUGCuc---CUGUAGCUCCUGaugaCG- -5'
18507 5' -52 NC_004681.1 + 60065 0.7 0.782328
Target:  5'- gCUGAcCGuGGcCAUCGAGGACgcggGCu -3'
miRNA:   3'- -GACU-GCuCCuGUAGCUCCUGaugaCG- -5'
18507 5' -52 NC_004681.1 + 71168 0.69 0.811209
Target:  5'- gCUGGgGAGGAUugCGAGGAagAUUGCg -3'
miRNA:   3'- -GACUgCUCCUGuaGCUCCUgaUGACG- -5'
18507 5' -52 NC_004681.1 + 23144 0.69 0.829552
Target:  5'- -gGGCGGGGACGUUGuGGAUUGacggGUc -3'
miRNA:   3'- gaCUGCUCCUGUAGCuCCUGAUga--CG- -5'
18507 5' -52 NC_004681.1 + 61907 0.69 0.829552
Target:  5'- uUGGCGcuguGGcACcgCGAGGACccgaACUGCg -3'
miRNA:   3'- gACUGCu---CC-UGuaGCUCCUGa---UGACG- -5'
18507 5' -52 NC_004681.1 + 58970 0.68 0.854672
Target:  5'- gCUGGCGAGGAgGUgGAugguuugcucgugGGAgUGgUGCg -3'
miRNA:   3'- -GACUGCUCCUgUAgCU-------------CCUgAUgACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.