miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18507 5' -52 NC_004681.1 + 4045 0.68 0.87938
Target:  5'- -gGAgGAGGACccguggaaCGAGGAgUGCUGg -3'
miRNA:   3'- gaCUgCUCCUGua------GCUCCUgAUGACg -5'
18507 5' -52 NC_004681.1 + 6608 0.75 0.505144
Target:  5'- -cGGCaAGGACAUCaAGGGCUucgcGCUGCa -3'
miRNA:   3'- gaCUGcUCCUGUAGcUCCUGA----UGACG- -5'
18507 5' -52 NC_004681.1 + 10006 0.74 0.526033
Target:  5'- uCUGGuCGAGGACGacgucgccaUCGuGGACccgUACUGCg -3'
miRNA:   3'- -GACU-GCUCCUGU---------AGCuCCUG---AUGACG- -5'
18507 5' -52 NC_004681.1 + 11298 0.74 0.557945
Target:  5'- -gGugGGGGACAgggUGAGGuCUccgACUGCg -3'
miRNA:   3'- gaCugCUCCUGUa--GCUCCuGA---UGACG- -5'
18507 5' -52 NC_004681.1 + 16682 0.74 0.54724
Target:  5'- -cGAcCGGGGACGcCGGGGGCUugUaGCg -3'
miRNA:   3'- gaCU-GCUCCUGUaGCUCCUGAugA-CG- -5'
18507 5' -52 NC_004681.1 + 18393 0.67 0.907673
Target:  5'- gCUGACcgcca-GUCGAGGACUGCgGCc -3'
miRNA:   3'- -GACUGcuccugUAGCUCCUGAUGaCG- -5'
18507 5' -52 NC_004681.1 + 19416 0.66 0.942041
Target:  5'- -cGACGAGGACG-C-AGGcguCUGCgGCa -3'
miRNA:   3'- gaCUGCUCCUGUaGcUCCu--GAUGaCG- -5'
18507 5' -52 NC_004681.1 + 21387 0.71 0.720706
Target:  5'- uCUGAUcaAGGACGUCGuGGACU--UGCa -3'
miRNA:   3'- -GACUGc-UCCUGUAGCuCCUGAugACG- -5'
18507 5' -52 NC_004681.1 + 22369 0.68 0.871665
Target:  5'- -cGGCGAGGACcuccccgacGUCGAguGGAC-GCUGg -3'
miRNA:   3'- gaCUGCUCCUG---------UAGCU--CCUGaUGACg -5'
18507 5' -52 NC_004681.1 + 23144 0.69 0.829552
Target:  5'- -gGGCGGGGACGUUGuGGAUUGacggGUc -3'
miRNA:   3'- gaCUGCUCCUGUAGCuCCUGAUga--CG- -5'
18507 5' -52 NC_004681.1 + 24887 0.74 0.526033
Target:  5'- aUGGCGAGGGCggCGAccccggcaaguGGGCaGCUGCc -3'
miRNA:   3'- gACUGCUCCUGuaGCU-----------CCUGaUGACG- -5'
18507 5' -52 NC_004681.1 + 26886 0.72 0.677735
Target:  5'- -cGGCGAGGACAUgGAGcGC-AUUGCc -3'
miRNA:   3'- gaCUGCUCCUGUAgCUCcUGaUGACG- -5'
18507 5' -52 NC_004681.1 + 28431 0.72 0.634076
Target:  5'- gUGACGAGGACAUCGuucgu--CUGCg -3'
miRNA:   3'- gACUGCUCCUGUAGCuccugauGACG- -5'
18507 5' -52 NC_004681.1 + 38997 0.71 0.699349
Target:  5'- -cGACGAGGAaggcgucaaCGUCGAcGGcCUGCUGg -3'
miRNA:   3'- gaCUGCUCCU---------GUAGCU-CCuGAUGACg -5'
18507 5' -52 NC_004681.1 + 39294 0.7 0.772378
Target:  5'- gCUGACGuccucGACGUCGAGGGCga--GCa -3'
miRNA:   3'- -GACUGCuc---CUGUAGCUCCUGaugaCG- -5'
18507 5' -52 NC_004681.1 + 39862 0.66 0.926085
Target:  5'- -gGGCGAGGuCuUCGGGGGucaUGCUGa -3'
miRNA:   3'- gaCUGCUCCuGuAGCUCCUg--AUGACg -5'
18507 5' -52 NC_004681.1 + 40624 0.74 0.56871
Target:  5'- cCUGACc-GGGCAauacaaccUCGAGGACUACgucggGCa -3'
miRNA:   3'- -GACUGcuCCUGU--------AGCUCCUGAUGa----CG- -5'
18507 5' -52 NC_004681.1 + 44738 0.67 0.89405
Target:  5'- -cGGCGccuucGACGUCGAGGACUcccucGCggGCg -3'
miRNA:   3'- gaCUGCuc---CUGUAGCUCCUGA-----UGa-CG- -5'
18507 5' -52 NC_004681.1 + 47121 0.68 0.87938
Target:  5'- -cGACGAGaACGcCGAGGGCcgcgccgaACUGCg -3'
miRNA:   3'- gaCUGCUCcUGUaGCUCCUGa-------UGACG- -5'
18507 5' -52 NC_004681.1 + 48677 0.68 0.87088
Target:  5'- uCUG-CGAGGGCGUgGcccacgaugcagcAGGGCUggguGCUGCc -3'
miRNA:   3'- -GACuGCUCCUGUAgC-------------UCCUGA----UGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.