Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18507 | 5' | -52 | NC_004681.1 | + | 47121 | 0.68 | 0.87938 |
Target: 5'- -cGACGAGaACGcCGAGGGCcgcgccgaACUGCg -3' miRNA: 3'- gaCUGCUCcUGUaGCUCCUGa-------UGACG- -5' |
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18507 | 5' | -52 | NC_004681.1 | + | 44738 | 0.67 | 0.89405 |
Target: 5'- -cGGCGccuucGACGUCGAGGACUcccucGCggGCg -3' miRNA: 3'- gaCUGCuc---CUGUAGCUCCUGA-----UGa-CG- -5' |
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18507 | 5' | -52 | NC_004681.1 | + | 40624 | 0.74 | 0.56871 |
Target: 5'- cCUGACc-GGGCAauacaaccUCGAGGACUACgucggGCa -3' miRNA: 3'- -GACUGcuCCUGU--------AGCUCCUGAUGa----CG- -5' |
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18507 | 5' | -52 | NC_004681.1 | + | 39862 | 0.66 | 0.926085 |
Target: 5'- -gGGCGAGGuCuUCGGGGGucaUGCUGa -3' miRNA: 3'- gaCUGCUCCuGuAGCUCCUg--AUGACg -5' |
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18507 | 5' | -52 | NC_004681.1 | + | 39294 | 0.7 | 0.772378 |
Target: 5'- gCUGACGuccucGACGUCGAGGGCga--GCa -3' miRNA: 3'- -GACUGCuc---CUGUAGCUCCUGaugaCG- -5' |
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18507 | 5' | -52 | NC_004681.1 | + | 38997 | 0.71 | 0.699349 |
Target: 5'- -cGACGAGGAaggcgucaaCGUCGAcGGcCUGCUGg -3' miRNA: 3'- gaCUGCUCCU---------GUAGCU-CCuGAUGACg -5' |
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18507 | 5' | -52 | NC_004681.1 | + | 28431 | 0.72 | 0.634076 |
Target: 5'- gUGACGAGGACAUCGuucgu--CUGCg -3' miRNA: 3'- gACUGCUCCUGUAGCuccugauGACG- -5' |
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18507 | 5' | -52 | NC_004681.1 | + | 26886 | 0.72 | 0.677735 |
Target: 5'- -cGGCGAGGACAUgGAGcGC-AUUGCc -3' miRNA: 3'- gaCUGCUCCUGUAgCUCcUGaUGACG- -5' |
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18507 | 5' | -52 | NC_004681.1 | + | 24887 | 0.74 | 0.526033 |
Target: 5'- aUGGCGAGGGCggCGAccccggcaaguGGGCaGCUGCc -3' miRNA: 3'- gACUGCUCCUGuaGCU-----------CCUGaUGACG- -5' |
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18507 | 5' | -52 | NC_004681.1 | + | 23144 | 0.69 | 0.829552 |
Target: 5'- -gGGCGGGGACGUUGuGGAUUGacggGUc -3' miRNA: 3'- gaCUGCUCCUGUAGCuCCUGAUga--CG- -5' |
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18507 | 5' | -52 | NC_004681.1 | + | 22369 | 0.68 | 0.871665 |
Target: 5'- -cGGCGAGGACcuccccgacGUCGAguGGAC-GCUGg -3' miRNA: 3'- gaCUGCUCCUG---------UAGCU--CCUGaUGACg -5' |
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18507 | 5' | -52 | NC_004681.1 | + | 21387 | 0.71 | 0.720706 |
Target: 5'- uCUGAUcaAGGACGUCGuGGACU--UGCa -3' miRNA: 3'- -GACUGc-UCCUGUAGCuCCUGAugACG- -5' |
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18507 | 5' | -52 | NC_004681.1 | + | 19416 | 0.66 | 0.942041 |
Target: 5'- -cGACGAGGACG-C-AGGcguCUGCgGCa -3' miRNA: 3'- gaCUGCUCCUGUaGcUCCu--GAUGaCG- -5' |
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18507 | 5' | -52 | NC_004681.1 | + | 18393 | 0.67 | 0.907673 |
Target: 5'- gCUGACcgcca-GUCGAGGACUGCgGCc -3' miRNA: 3'- -GACUGcuccugUAGCUCCUGAUGaCG- -5' |
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18507 | 5' | -52 | NC_004681.1 | + | 16682 | 0.74 | 0.54724 |
Target: 5'- -cGAcCGGGGACGcCGGGGGCUugUaGCg -3' miRNA: 3'- gaCU-GCUCCUGUaGCUCCUGAugA-CG- -5' |
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18507 | 5' | -52 | NC_004681.1 | + | 11298 | 0.74 | 0.557945 |
Target: 5'- -gGugGGGGACAgggUGAGGuCUccgACUGCg -3' miRNA: 3'- gaCugCUCCUGUa--GCUCCuGA---UGACG- -5' |
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18507 | 5' | -52 | NC_004681.1 | + | 10006 | 0.74 | 0.526033 |
Target: 5'- uCUGGuCGAGGACGacgucgccaUCGuGGACccgUACUGCg -3' miRNA: 3'- -GACU-GCUCCUGU---------AGCuCCUG---AUGACG- -5' |
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18507 | 5' | -52 | NC_004681.1 | + | 6608 | 0.75 | 0.505144 |
Target: 5'- -cGGCaAGGACAUCaAGGGCUucgcGCUGCa -3' miRNA: 3'- gaCUGcUCCUGUAGcUCCUGA----UGACG- -5' |
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18507 | 5' | -52 | NC_004681.1 | + | 4045 | 0.68 | 0.87938 |
Target: 5'- -gGAgGAGGACccguggaaCGAGGAgUGCUGg -3' miRNA: 3'- gaCUgCUCCUGua------GCUCCUgAUGACg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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