miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18508 5' -53.1 NC_004681.1 + 401 0.66 0.899908
Target:  5'- cAAgGGCaccgGCACCGucUCUugGCCGguGGAc -3'
miRNA:   3'- cUUgCCGa---UGUGGU--AGAugCGGC--UCU- -5'
18508 5' -53.1 NC_004681.1 + 16127 0.66 0.899908
Target:  5'- cAGCGGCgGCGCCcUUgccaGCaGCCGGGAc -3'
miRNA:   3'- cUUGCCGaUGUGGuAGa---UG-CGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 27017 0.66 0.892917
Target:  5'- cGGAUGGC-ACACCGcCUACGCggucgccuuCGAGu -3'
miRNA:   3'- -CUUGCCGaUGUGGUaGAUGCG---------GCUCu -5'
18508 5' -53.1 NC_004681.1 + 30252 0.66 0.878154
Target:  5'- cAGCGGCgGCgGCCGguacgGCGUCGAGAc -3'
miRNA:   3'- cUUGCCGaUG-UGGUaga--UGCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 50381 0.66 0.870393
Target:  5'- aGGGCGGCUACcgcuACCAcgaCUACGgCGAc- -3'
miRNA:   3'- -CUUGCCGAUG----UGGUa--GAUGCgGCUcu -5'
18508 5' -53.1 NC_004681.1 + 19023 0.67 0.862387
Target:  5'- aGACGGCgACACCuggaacgacuccAUCUAugaaucCGCCGAGc -3'
miRNA:   3'- cUUGCCGaUGUGG------------UAGAU------GCGGCUCu -5'
18508 5' -53.1 NC_004681.1 + 28843 0.67 0.857469
Target:  5'- -cAUGGCgACACCGUCguaggugaugccaguUACGCCGGu- -3'
miRNA:   3'- cuUGCCGaUGUGGUAG---------------AUGCGGCUcu -5'
18508 5' -53.1 NC_004681.1 + 30784 0.67 0.849086
Target:  5'- cAACGGCcGCGCCAUgacugucgacaacucCUACGCCa--- -3'
miRNA:   3'- cUUGCCGaUGUGGUA---------------GAUGCGGcucu -5'
18508 5' -53.1 NC_004681.1 + 7263 0.67 0.845669
Target:  5'- -cGCGGCcgucCACC-UCgGCGCCGAGu -3'
miRNA:   3'- cuUGCCGau--GUGGuAGaUGCGGCUCu -5'
18508 5' -53.1 NC_004681.1 + 50100 0.67 0.836973
Target:  5'- aGGACGGCUACAUCA---GCcUCGAGGa -3'
miRNA:   3'- -CUUGCCGAUGUGGUagaUGcGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 9619 0.67 0.828064
Target:  5'- gGGGCGG-UACACCAgc-AgGCCGAGGc -3'
miRNA:   3'- -CUUGCCgAUGUGGUagaUgCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 2931 0.67 0.818951
Target:  5'- cGACGGCacCGCCAcgcGCGCCGAGu -3'
miRNA:   3'- cUUGCCGauGUGGUagaUGCGGCUCu -5'
18508 5' -53.1 NC_004681.1 + 62839 0.67 0.818951
Target:  5'- aAGgGGC-GCACCGagcGCGCCGAGAa -3'
miRNA:   3'- cUUgCCGaUGUGGUagaUGCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 55863 0.67 0.818951
Target:  5'- gGAGCuGGUUACAUCAUCaugaaacugacGCGCCGaAGAa -3'
miRNA:   3'- -CUUG-CCGAUGUGGUAGa----------UGCGGC-UCU- -5'
18508 5' -53.1 NC_004681.1 + 22476 0.67 0.818951
Target:  5'- aGAACGGCgacaacgcCACCAUCaucgGCGCCucGGAc -3'
miRNA:   3'- -CUUGCCGau------GUGGUAGa---UGCGGc-UCU- -5'
18508 5' -53.1 NC_004681.1 + 18773 0.68 0.808702
Target:  5'- aGGCGGCUGC-CCGUUgcccugaUGCuGCUGAGGg -3'
miRNA:   3'- cUUGCCGAUGuGGUAG-------AUG-CGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 6355 0.68 0.799192
Target:  5'- gGggUGGCgACACCGgaguugaccaucuUCUGCGUCGAc- -3'
miRNA:   3'- -CuuGCCGaUGUGGU-------------AGAUGCGGCUcu -5'
18508 5' -53.1 NC_004681.1 + 59956 0.69 0.760549
Target:  5'- gGGACGGCUcagGCAUCGcuuUCgAUGUCGAGAu -3'
miRNA:   3'- -CUUGCCGA---UGUGGU---AGaUGCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 2293 0.69 0.760549
Target:  5'- -uGCGGCUACACCcUCgaugacaucgaaUGCaCCGAGGu -3'
miRNA:   3'- cuUGCCGAUGUGGuAG------------AUGcGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 7372 0.69 0.760549
Target:  5'- aGGCGGC-GCACUcg--GCGCCGAGGu -3'
miRNA:   3'- cUUGCCGaUGUGGuagaUGCGGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.