miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18508 5' -53.1 NC_004681.1 + 59134 1.09 0.002369
Target:  5'- gGAACGGCUACACCAUCUACGCCGAGAa -3'
miRNA:   3'- -CUUGCCGAUGUGGUAGAUGCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 6183 0.8 0.218667
Target:  5'- -cGCGGUagaacGCGCgCAUCUGCGCCGAGAu -3'
miRNA:   3'- cuUGCCGa----UGUG-GUAGAUGCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 61191 0.77 0.335909
Target:  5'- cGACGccacauuccuccGCUGCACCAUCUGgcgcgacgcCGCCGAGAa -3'
miRNA:   3'- cUUGC------------CGAUGUGGUAGAU---------GCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 68888 0.74 0.452725
Target:  5'- -cGCGGCcgACGCCAUCgagGCGCUGAc- -3'
miRNA:   3'- cuUGCCGa-UGUGGUAGa--UGCGGCUcu -5'
18508 5' -53.1 NC_004681.1 + 341 0.74 0.462604
Target:  5'- cGAgGGCUGCACCGUCauggGCGCCauccgcGAGGa -3'
miRNA:   3'- cUUgCCGAUGUGGUAGa---UGCGG------CUCU- -5'
18508 5' -53.1 NC_004681.1 + 42929 0.73 0.513591
Target:  5'- uGGCGGCUGCGaacgCUGCGCCGAa- -3'
miRNA:   3'- cUUGCCGAUGUgguaGAUGCGGCUcu -5'
18508 5' -53.1 NC_004681.1 + 52512 0.73 0.532513
Target:  5'- aGACGGCgaguucgaccuCACCGaCUugGCCGAGGc -3'
miRNA:   3'- cUUGCCGau---------GUGGUaGAugCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 20639 0.72 0.566729
Target:  5'- cGGCGGUUGCugCguuguacggGUCUGCGCgGAGGc -3'
miRNA:   3'- cUUGCCGAUGugG---------UAGAUGCGgCUCU- -5'
18508 5' -53.1 NC_004681.1 + 16556 0.72 0.566729
Target:  5'- uGGGgGGCUggaACGCCA-CcACGCCGAGAc -3'
miRNA:   3'- -CUUgCCGA---UGUGGUaGaUGCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 29448 0.71 0.61022
Target:  5'- cAACGGCUACACCAcggGCGgUGAGu -3'
miRNA:   3'- cUUGCCGAUGUGGUagaUGCgGCUCu -5'
18508 5' -53.1 NC_004681.1 + 45851 0.71 0.632114
Target:  5'- uGACGaGCc-CAUCAUUUGCGCCGGGGa -3'
miRNA:   3'- cUUGC-CGauGUGGUAGAUGCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 50961 0.71 0.643065
Target:  5'- --uCGGCUACACC---UACGCCGAc- -3'
miRNA:   3'- cuuGCCGAUGUGGuagAUGCGGCUcu -5'
18508 5' -53.1 NC_004681.1 + 33300 0.7 0.708204
Target:  5'- --cCGGUcGCGCCgcgGUgUACGCCGGGAc -3'
miRNA:   3'- cuuGCCGaUGUGG---UAgAUGCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 48771 0.7 0.709273
Target:  5'- cGGCGGCUACACCuggagugaggcCGUCGAGGg -3'
miRNA:   3'- cUUGCCGAUGUGGuagau------GCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 9032 0.69 0.729442
Target:  5'- cGAAC-GCUGCagcagGCCGUUgACGCCGGGGu -3'
miRNA:   3'- -CUUGcCGAUG-----UGGUAGaUGCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 52308 0.69 0.739923
Target:  5'- gGGAUGGCgGgGCCGuUCUugGCCGuGGa -3'
miRNA:   3'- -CUUGCCGaUgUGGU-AGAugCGGCuCU- -5'
18508 5' -53.1 NC_004681.1 + 56689 0.69 0.739923
Target:  5'- ---aGGCUuCAUCGUCUACGgCGAGc -3'
miRNA:   3'- cuugCCGAuGUGGUAGAUGCgGCUCu -5'
18508 5' -53.1 NC_004681.1 + 21987 0.69 0.739923
Target:  5'- aAGCu-CUACACCGaCUACGUCGAGAa -3'
miRNA:   3'- cUUGccGAUGUGGUaGAUGCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 2293 0.69 0.760549
Target:  5'- -uGCGGCUACACCcUCgaugacaucgaaUGCaCCGAGGu -3'
miRNA:   3'- cuUGCCGAUGUGGuAG------------AUGcGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 59956 0.69 0.760549
Target:  5'- gGGACGGCUcagGCAUCGcuuUCgAUGUCGAGAu -3'
miRNA:   3'- -CUUGCCGA---UGUGGU---AGaUGCGGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.