miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18508 5' -53.1 NC_004681.1 + 7263 0.67 0.845669
Target:  5'- -cGCGGCcgucCACC-UCgGCGCCGAGu -3'
miRNA:   3'- cuUGCCGau--GUGGuAGaUGCGGCUCu -5'
18508 5' -53.1 NC_004681.1 + 56689 0.69 0.739923
Target:  5'- ---aGGCUuCAUCGUCUACGgCGAGc -3'
miRNA:   3'- cuugCCGAuGUGGUAGAUGCgGCUCu -5'
18508 5' -53.1 NC_004681.1 + 2293 0.69 0.760549
Target:  5'- -uGCGGCUACACCcUCgaugacaucgaaUGCaCCGAGGu -3'
miRNA:   3'- cuUGCCGAUGUGGuAG------------AUGcGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 59956 0.69 0.760549
Target:  5'- gGGACGGCUcagGCAUCGcuuUCgAUGUCGAGAu -3'
miRNA:   3'- -CUUGCCGA---UGUGGU---AGaUGCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 2931 0.67 0.818951
Target:  5'- cGACGGCacCGCCAcgcGCGCCGAGu -3'
miRNA:   3'- cUUGCCGauGUGGUagaUGCGGCUCu -5'
18508 5' -53.1 NC_004681.1 + 22476 0.67 0.818951
Target:  5'- aGAACGGCgacaacgcCACCAUCaucgGCGCCucGGAc -3'
miRNA:   3'- -CUUGCCGau------GUGGUAGa---UGCGGc-UCU- -5'
18508 5' -53.1 NC_004681.1 + 55863 0.67 0.818951
Target:  5'- gGAGCuGGUUACAUCAUCaugaaacugacGCGCCGaAGAa -3'
miRNA:   3'- -CUUG-CCGAUGUGGUAGa----------UGCGGC-UCU- -5'
18508 5' -53.1 NC_004681.1 + 62839 0.67 0.818951
Target:  5'- aAGgGGC-GCACCGagcGCGCCGAGAa -3'
miRNA:   3'- cUUgCCGaUGUGGUagaUGCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 50100 0.67 0.836973
Target:  5'- aGGACGGCUACAUCA---GCcUCGAGGa -3'
miRNA:   3'- -CUUGCCGAUGUGGUagaUGcGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 21987 0.69 0.739923
Target:  5'- aAGCu-CUACACCGaCUACGUCGAGAa -3'
miRNA:   3'- cUUGccGAUGUGGUaGAUGCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 48771 0.7 0.709273
Target:  5'- cGGCGGCUACACCuggagugaggcCGUCGAGGg -3'
miRNA:   3'- cUUGCCGAUGUGGuagau------GCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 33300 0.7 0.708204
Target:  5'- --cCGGUcGCGCCgcgGUgUACGCCGGGAc -3'
miRNA:   3'- cuuGCCGaUGUGG---UAgAUGCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 61191 0.77 0.335909
Target:  5'- cGACGccacauuccuccGCUGCACCAUCUGgcgcgacgcCGCCGAGAa -3'
miRNA:   3'- cUUGC------------CGAUGUGGUAGAU---------GCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 68888 0.74 0.452725
Target:  5'- -cGCGGCcgACGCCAUCgagGCGCUGAc- -3'
miRNA:   3'- cuUGCCGa-UGUGGUAGa--UGCGGCUcu -5'
18508 5' -53.1 NC_004681.1 + 341 0.74 0.462604
Target:  5'- cGAgGGCUGCACCGUCauggGCGCCauccgcGAGGa -3'
miRNA:   3'- cUUgCCGAUGUGGUAGa---UGCGG------CUCU- -5'
18508 5' -53.1 NC_004681.1 + 42929 0.73 0.513591
Target:  5'- uGGCGGCUGCGaacgCUGCGCCGAa- -3'
miRNA:   3'- cUUGCCGAUGUgguaGAUGCGGCUcu -5'
18508 5' -53.1 NC_004681.1 + 52512 0.73 0.532513
Target:  5'- aGACGGCgaguucgaccuCACCGaCUugGCCGAGGc -3'
miRNA:   3'- cUUGCCGau---------GUGGUaGAugCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 29448 0.71 0.61022
Target:  5'- cAACGGCUACACCAcggGCGgUGAGu -3'
miRNA:   3'- cUUGCCGAUGUGGUagaUGCgGCUCu -5'
18508 5' -53.1 NC_004681.1 + 45851 0.71 0.632114
Target:  5'- uGACGaGCc-CAUCAUUUGCGCCGGGGa -3'
miRNA:   3'- cUUGC-CGauGUGGUAGAUGCGGCUCU- -5'
18508 5' -53.1 NC_004681.1 + 50961 0.71 0.643065
Target:  5'- --uCGGCUACACC---UACGCCGAc- -3'
miRNA:   3'- cuuGCCGAUGUGGuagAUGCGGCUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.