Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18508 | 5' | -53.1 | NC_004681.1 | + | 29448 | 0.71 | 0.61022 |
Target: 5'- cAACGGCUACACCAcggGCGgUGAGu -3' miRNA: 3'- cUUGCCGAUGUGGUagaUGCgGCUCu -5' |
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18508 | 5' | -53.1 | NC_004681.1 | + | 45851 | 0.71 | 0.632114 |
Target: 5'- uGACGaGCc-CAUCAUUUGCGCCGGGGa -3' miRNA: 3'- cUUGC-CGauGUGGUAGAUGCGGCUCU- -5' |
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18508 | 5' | -53.1 | NC_004681.1 | + | 56689 | 0.69 | 0.739923 |
Target: 5'- ---aGGCUuCAUCGUCUACGgCGAGc -3' miRNA: 3'- cuugCCGAuGUGGUAGAUGCgGCUCu -5' |
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18508 | 5' | -53.1 | NC_004681.1 | + | 21987 | 0.69 | 0.739923 |
Target: 5'- aAGCu-CUACACCGaCUACGUCGAGAa -3' miRNA: 3'- cUUGccGAUGUGGUaGAUGCGGCUCU- -5' |
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18508 | 5' | -53.1 | NC_004681.1 | + | 48771 | 0.7 | 0.709273 |
Target: 5'- cGGCGGCUACACCuggagugaggcCGUCGAGGg -3' miRNA: 3'- cUUGCCGAUGUGGuagau------GCGGCUCU- -5' |
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18508 | 5' | -53.1 | NC_004681.1 | + | 33300 | 0.7 | 0.708204 |
Target: 5'- --cCGGUcGCGCCgcgGUgUACGCCGGGAc -3' miRNA: 3'- cuuGCCGaUGUGG---UAgAUGCGGCUCU- -5' |
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18508 | 5' | -53.1 | NC_004681.1 | + | 50961 | 0.71 | 0.643065 |
Target: 5'- --uCGGCUACACC---UACGCCGAc- -3' miRNA: 3'- cuuGCCGAUGUGGuagAUGCGGCUcu -5' |
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18508 | 5' | -53.1 | NC_004681.1 | + | 28843 | 0.67 | 0.857469 |
Target: 5'- -cAUGGCgACACCGUCguaggugaugccaguUACGCCGGu- -3' miRNA: 3'- cuUGCCGaUGUGGUAG---------------AUGCGGCUcu -5' |
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18508 | 5' | -53.1 | NC_004681.1 | + | 9619 | 0.67 | 0.828064 |
Target: 5'- gGGGCGG-UACACCAgc-AgGCCGAGGc -3' miRNA: 3'- -CUUGCCgAUGUGGUagaUgCGGCUCU- -5' |
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18508 | 5' | -53.1 | NC_004681.1 | + | 18773 | 0.68 | 0.808702 |
Target: 5'- aGGCGGCUGC-CCGUUgcccugaUGCuGCUGAGGg -3' miRNA: 3'- cUUGCCGAUGuGGUAG-------AUG-CGGCUCU- -5' |
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18508 | 5' | -53.1 | NC_004681.1 | + | 6355 | 0.68 | 0.799192 |
Target: 5'- gGggUGGCgACACCGgaguugaccaucuUCUGCGUCGAc- -3' miRNA: 3'- -CuuGCCGaUGUGGU-------------AGAUGCGGCUcu -5' |
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18508 | 5' | -53.1 | NC_004681.1 | + | 7372 | 0.69 | 0.760549 |
Target: 5'- aGGCGGC-GCACUcg--GCGCCGAGGu -3' miRNA: 3'- cUUGCCGaUGUGGuagaUGCGGCUCU- -5' |
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18508 | 5' | -53.1 | NC_004681.1 | + | 52308 | 0.69 | 0.739923 |
Target: 5'- gGGAUGGCgGgGCCGuUCUugGCCGuGGa -3' miRNA: 3'- -CUUGCCGaUgUGGU-AGAugCGGCuCU- -5' |
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18508 | 5' | -53.1 | NC_004681.1 | + | 9032 | 0.69 | 0.729442 |
Target: 5'- cGAAC-GCUGCagcagGCCGUUgACGCCGGGGu -3' miRNA: 3'- -CUUGcCGAUG-----UGGUAGaUGCGGCUCU- -5' |
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18508 | 5' | -53.1 | NC_004681.1 | + | 16556 | 0.72 | 0.566729 |
Target: 5'- uGGGgGGCUggaACGCCA-CcACGCCGAGAc -3' miRNA: 3'- -CUUgCCGA---UGUGGUaGaUGCGGCUCU- -5' |
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18508 | 5' | -53.1 | NC_004681.1 | + | 20639 | 0.72 | 0.566729 |
Target: 5'- cGGCGGUUGCugCguuguacggGUCUGCGCgGAGGc -3' miRNA: 3'- cUUGCCGAUGugG---------UAGAUGCGgCUCU- -5' |
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18508 | 5' | -53.1 | NC_004681.1 | + | 6183 | 0.8 | 0.218667 |
Target: 5'- -cGCGGUagaacGCGCgCAUCUGCGCCGAGAu -3' miRNA: 3'- cuUGCCGa----UGUG-GUAGAUGCGGCUCU- -5' |
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18508 | 5' | -53.1 | NC_004681.1 | + | 16127 | 0.66 | 0.899908 |
Target: 5'- cAGCGGCgGCGCCcUUgccaGCaGCCGGGAc -3' miRNA: 3'- cUUGCCGaUGUGGuAGa---UG-CGGCUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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