miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18509 3' -48.5 NC_004681.1 + 58024 0.65 0.993758
Target:  5'- uCCUugaUGUCGAgguauucCUGGu---ACCAGUCCg -3'
miRNA:   3'- uGGA---AUAGCU-------GGCCuauuUGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 75159 0.66 0.99284
Target:  5'- cGCCggUAUCGccuACCGGGUcgaGGACaCAGaCCa -3'
miRNA:   3'- -UGGa-AUAGC---UGGCCUA---UUUG-GUCaGG- -5'
18509 3' -48.5 NC_004681.1 + 60869 0.66 0.99284
Target:  5'- cCCUUAUgcgUGGCUGGucAAGCUAGUCa -3'
miRNA:   3'- uGGAAUA---GCUGGCCuaUUUGGUCAGg -5'
18509 3' -48.5 NC_004681.1 + 46522 0.66 0.99284
Target:  5'- aACCUgcgCGGuuGGGUGAGCUc-UCCa -3'
miRNA:   3'- -UGGAauaGCUggCCUAUUUGGucAGG- -5'
18509 3' -48.5 NC_004681.1 + 39267 0.66 0.99284
Target:  5'- cAUCUccgCGGcCCGGAU--GCCGGUCUc -3'
miRNA:   3'- -UGGAauaGCU-GGCCUAuuUGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 74197 0.66 0.99284
Target:  5'- aGCCUcaugcGUCGGgCGGAUGGACUgauGGaCCg -3'
miRNA:   3'- -UGGAa----UAGCUgGCCUAUUUGG---UCaGG- -5'
18509 3' -48.5 NC_004681.1 + 47322 0.66 0.990412
Target:  5'- --aUUGUCGGCggugCGGAUGGACUGG-CCa -3'
miRNA:   3'- uggAAUAGCUG----GCCUAUUUGGUCaGG- -5'
18509 3' -48.5 NC_004681.1 + 43126 0.66 0.988978
Target:  5'- -gCUUAUCu-CCGGGUuguCCAGUCg -3'
miRNA:   3'- ugGAAUAGcuGGCCUAuuuGGUCAGg -5'
18509 3' -48.5 NC_004681.1 + 10292 0.66 0.988672
Target:  5'- gGCCggugcuccacUCGgaGCCGGggAGGCCGGUCg -3'
miRNA:   3'- -UGGaau-------AGC--UGGCCuaUUUGGUCAGg -5'
18509 3' -48.5 NC_004681.1 + 13983 0.67 0.987382
Target:  5'- gGCCUgugCGuacucauCCGGG--GACCAGUCg -3'
miRNA:   3'- -UGGAauaGCu------GGCCUauUUGGUCAGg -5'
18509 3' -48.5 NC_004681.1 + 57143 0.67 0.987382
Target:  5'- uUCUUGUCGGacaaGGAgauuGGCCGGUCa -3'
miRNA:   3'- uGGAAUAGCUgg--CCUau--UUGGUCAGg -5'
18509 3' -48.5 NC_004681.1 + 7590 0.67 0.987382
Target:  5'- gGCCcaggcAUCGACCGGAgcguccGAACgCAGggCCu -3'
miRNA:   3'- -UGGaa---UAGCUGGCCUa-----UUUG-GUCa-GG- -5'
18509 3' -48.5 NC_004681.1 + 22636 0.67 0.985614
Target:  5'- gGCCUcGUCGuACUGGAggaUGAAUCcGUCUg -3'
miRNA:   3'- -UGGAaUAGC-UGGCCU---AUUUGGuCAGG- -5'
18509 3' -48.5 NC_004681.1 + 31190 0.67 0.985614
Target:  5'- uCCUUGagCGugCGGAcugcguccuGCCAGUUCg -3'
miRNA:   3'- uGGAAUa-GCugGCCUauu------UGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 860 0.67 0.985614
Target:  5'- cACCccGUCaugggcggcagGGCCGGGUAGGCCGucaccagucGUCCu -3'
miRNA:   3'- -UGGaaUAG-----------CUGGCCUAUUUGGU---------CAGG- -5'
18509 3' -48.5 NC_004681.1 + 26830 0.67 0.982398
Target:  5'- aGCCgagGUUGGCCGGGgcgggcuuaccgagGAACgGGUCa -3'
miRNA:   3'- -UGGaa-UAGCUGGCCUa-------------UUUGgUCAGg -5'
18509 3' -48.5 NC_004681.1 + 64956 0.67 0.982398
Target:  5'- aGCCUUcacCaGCUGGGUGAggucgcggcgcagguACCAGUCCc -3'
miRNA:   3'- -UGGAAua-GcUGGCCUAUU---------------UGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 33133 0.67 0.979165
Target:  5'- aGCCagGUUGACgGGGgcgauGCCAuGUCCc -3'
miRNA:   3'- -UGGaaUAGCUGgCCUauu--UGGU-CAGG- -5'
18509 3' -48.5 NC_004681.1 + 6548 0.67 0.979165
Target:  5'- cACCgaggCGGgCGGA--GACUGGUCCa -3'
miRNA:   3'- -UGGaauaGCUgGCCUauUUGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 42237 0.68 0.976599
Target:  5'- gGCCUcUAUCaGGCUGGcGUGGACCAGg-- -3'
miRNA:   3'- -UGGA-AUAG-CUGGCC-UAUUUGGUCagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.