miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18509 3' -48.5 NC_004681.1 + 59534 1.14 0.003841
Target:  5'- gACCUUAUCGACCGGAUAAACCAGUCCa -3'
miRNA:   3'- -UGGAAUAGCUGGCCUAUUUGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 32180 0.79 0.48402
Target:  5'- gACCUUGUCGGCCGGGU---CCAGcUUCu -3'
miRNA:   3'- -UGGAAUAGCUGGCCUAuuuGGUC-AGG- -5'
18509 3' -48.5 NC_004681.1 + 66004 0.76 0.681725
Target:  5'- gACCUUgcgGUCGcCCaGGAUcaugcgcgaGGACCAGUCCa -3'
miRNA:   3'- -UGGAA---UAGCuGG-CCUA---------UUUGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 22499 0.74 0.767927
Target:  5'- uGCCguccgCGGCCGGGguGACCAgcGUCCa -3'
miRNA:   3'- -UGGaaua-GCUGGCCUauUUGGU--CAGG- -5'
18509 3' -48.5 NC_004681.1 + 74829 0.72 0.853592
Target:  5'- cACCcg--CGGCCGGAUGcuCCAGUgCu -3'
miRNA:   3'- -UGGaauaGCUGGCCUAUuuGGUCAgG- -5'
18509 3' -48.5 NC_004681.1 + 2107 0.72 0.862038
Target:  5'- cACCUggccgCGGCCGGAUGGguGCUGGgCCa -3'
miRNA:   3'- -UGGAaua--GCUGGCCUAUU--UGGUCaGG- -5'
18509 3' -48.5 NC_004681.1 + 19350 0.72 0.862038
Target:  5'- gACCgacgaguUCGACCGGGUcGACCAcaCCg -3'
miRNA:   3'- -UGGaau----AGCUGGCCUAuUUGGUcaGG- -5'
18509 3' -48.5 NC_004681.1 + 54805 0.72 0.869427
Target:  5'- cACC--GUCGAgUGGAUGAACCAGaacgacaUCCc -3'
miRNA:   3'- -UGGaaUAGCUgGCCUAUUUGGUC-------AGG- -5'
18509 3' -48.5 NC_004681.1 + 26844 0.7 0.920124
Target:  5'- uACCUgg--GACCGcaGUGGGCCGGUCCc -3'
miRNA:   3'- -UGGAauagCUGGCc-UAUUUGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 16699 0.7 0.92613
Target:  5'- gGCCUgcaguugcagGUCGACCGGGgacGCCGGgggCUu -3'
miRNA:   3'- -UGGAa---------UAGCUGGCCUauuUGGUCa--GG- -5'
18509 3' -48.5 NC_004681.1 + 24552 0.7 0.931848
Target:  5'- cGCCUcGUUG-CCGGAc-AGCCGGUCa -3'
miRNA:   3'- -UGGAaUAGCuGGCCUauUUGGUCAGg -5'
18509 3' -48.5 NC_004681.1 + 747 0.7 0.93675
Target:  5'- uCCagGUCGACCGGAUcggcgucGAucACCGGgCCg -3'
miRNA:   3'- uGGaaUAGCUGGCCUA-------UU--UGGUCaGG- -5'
18509 3' -48.5 NC_004681.1 + 71929 0.69 0.956188
Target:  5'- uCCUcAUCGGCCGGAUu-GCCGuaugCCu -3'
miRNA:   3'- uGGAaUAGCUGGCCUAuuUGGUca--GG- -5'
18509 3' -48.5 NC_004681.1 + 30527 0.68 0.970785
Target:  5'- gGCCggUAcCaGCCGGGac-GCCAGUCCg -3'
miRNA:   3'- -UGGa-AUaGcUGGCCUauuUGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 25537 0.68 0.970785
Target:  5'- cACCaacgUGgaugCGGCCGGAUgggagucuGAACCAGgccCCg -3'
miRNA:   3'- -UGGa---AUa---GCUGGCCUA--------UUUGGUCa--GG- -5'
18509 3' -48.5 NC_004681.1 + 65063 0.68 0.973809
Target:  5'- cGCgUaGUCGugCGGGUAGuagacguCCAGcUCCa -3'
miRNA:   3'- -UGgAaUAGCugGCCUAUUu------GGUC-AGG- -5'
18509 3' -48.5 NC_004681.1 + 47043 0.68 0.975511
Target:  5'- cGCCUUGUCGcCCGaGucggcggccucaccGUagguagugccagcGAACCAGUCCc -3'
miRNA:   3'- -UGGAAUAGCuGGC-C--------------UA-------------UUUGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 42237 0.68 0.976599
Target:  5'- gGCCUcUAUCaGGCUGGcGUGGACCAGg-- -3'
miRNA:   3'- -UGGA-AUAG-CUGGCC-UAUUUGGUCagg -5'
18509 3' -48.5 NC_004681.1 + 6548 0.67 0.979165
Target:  5'- cACCgaggCGGgCGGA--GACUGGUCCa -3'
miRNA:   3'- -UGGaauaGCUgGCCUauUUGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 33133 0.67 0.979165
Target:  5'- aGCCagGUUGACgGGGgcgauGCCAuGUCCc -3'
miRNA:   3'- -UGGaaUAGCUGgCCUauu--UGGU-CAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.