miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18509 3' -48.5 NC_004681.1 + 747 0.7 0.93675
Target:  5'- uCCagGUCGACCGGAUcggcgucGAucACCGGgCCg -3'
miRNA:   3'- uGGaaUAGCUGGCCUA-------UU--UGGUCaGG- -5'
18509 3' -48.5 NC_004681.1 + 860 0.67 0.985614
Target:  5'- cACCccGUCaugggcggcagGGCCGGGUAGGCCGucaccagucGUCCu -3'
miRNA:   3'- -UGGaaUAG-----------CUGGCCUAUUUGGU---------CAGG- -5'
18509 3' -48.5 NC_004681.1 + 2107 0.72 0.862038
Target:  5'- cACCUggccgCGGCCGGAUGGguGCUGGgCCa -3'
miRNA:   3'- -UGGAaua--GCUGGCCUAUU--UGGUCaGG- -5'
18509 3' -48.5 NC_004681.1 + 6548 0.67 0.979165
Target:  5'- cACCgaggCGGgCGGA--GACUGGUCCa -3'
miRNA:   3'- -UGGaauaGCUgGCCUauUUGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 7590 0.67 0.987382
Target:  5'- gGCCcaggcAUCGACCGGAgcguccGAACgCAGggCCu -3'
miRNA:   3'- -UGGaa---UAGCUGGCCUa-----UUUG-GUCa-GG- -5'
18509 3' -48.5 NC_004681.1 + 10292 0.66 0.988672
Target:  5'- gGCCggugcuccacUCGgaGCCGGggAGGCCGGUCg -3'
miRNA:   3'- -UGGaau-------AGC--UGGCCuaUUUGGUCAGg -5'
18509 3' -48.5 NC_004681.1 + 13983 0.67 0.987382
Target:  5'- gGCCUgugCGuacucauCCGGG--GACCAGUCg -3'
miRNA:   3'- -UGGAauaGCu------GGCCUauUUGGUCAGg -5'
18509 3' -48.5 NC_004681.1 + 16699 0.7 0.92613
Target:  5'- gGCCUgcaguugcagGUCGACCGGGgacGCCGGgggCUu -3'
miRNA:   3'- -UGGAa---------UAGCUGGCCUauuUGGUCa--GG- -5'
18509 3' -48.5 NC_004681.1 + 19350 0.72 0.862038
Target:  5'- gACCgacgaguUCGACCGGGUcGACCAcaCCg -3'
miRNA:   3'- -UGGaau----AGCUGGCCUAuUUGGUcaGG- -5'
18509 3' -48.5 NC_004681.1 + 22499 0.74 0.767927
Target:  5'- uGCCguccgCGGCCGGGguGACCAgcGUCCa -3'
miRNA:   3'- -UGGaaua-GCUGGCCUauUUGGU--CAGG- -5'
18509 3' -48.5 NC_004681.1 + 22636 0.67 0.985614
Target:  5'- gGCCUcGUCGuACUGGAggaUGAAUCcGUCUg -3'
miRNA:   3'- -UGGAaUAGC-UGGCCU---AUUUGGuCAGG- -5'
18509 3' -48.5 NC_004681.1 + 24552 0.7 0.931848
Target:  5'- cGCCUcGUUG-CCGGAc-AGCCGGUCa -3'
miRNA:   3'- -UGGAaUAGCuGGCCUauUUGGUCAGg -5'
18509 3' -48.5 NC_004681.1 + 25537 0.68 0.970785
Target:  5'- cACCaacgUGgaugCGGCCGGAUgggagucuGAACCAGgccCCg -3'
miRNA:   3'- -UGGa---AUa---GCUGGCCUA--------UUUGGUCa--GG- -5'
18509 3' -48.5 NC_004681.1 + 26830 0.67 0.982398
Target:  5'- aGCCgagGUUGGCCGGGgcgggcuuaccgagGAACgGGUCa -3'
miRNA:   3'- -UGGaa-UAGCUGGCCUa-------------UUUGgUCAGg -5'
18509 3' -48.5 NC_004681.1 + 26844 0.7 0.920124
Target:  5'- uACCUgg--GACCGcaGUGGGCCGGUCCc -3'
miRNA:   3'- -UGGAauagCUGGCc-UAUUUGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 30527 0.68 0.970785
Target:  5'- gGCCggUAcCaGCCGGGac-GCCAGUCCg -3'
miRNA:   3'- -UGGa-AUaGcUGGCCUauuUGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 31190 0.67 0.985614
Target:  5'- uCCUUGagCGugCGGAcugcguccuGCCAGUUCg -3'
miRNA:   3'- uGGAAUa-GCugGCCUauu------UGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 32180 0.79 0.48402
Target:  5'- gACCUUGUCGGCCGGGU---CCAGcUUCu -3'
miRNA:   3'- -UGGAAUAGCUGGCCUAuuuGGUC-AGG- -5'
18509 3' -48.5 NC_004681.1 + 33133 0.67 0.979165
Target:  5'- aGCCagGUUGACgGGGgcgauGCCAuGUCCc -3'
miRNA:   3'- -UGGaaUAGCUGgCCUauu--UGGU-CAGG- -5'
18509 3' -48.5 NC_004681.1 + 39267 0.66 0.99284
Target:  5'- cAUCUccgCGGcCCGGAU--GCCGGUCUc -3'
miRNA:   3'- -UGGAauaGCU-GGCCUAuuUGGUCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.