miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18509 3' -48.5 NC_004681.1 + 42237 0.68 0.976599
Target:  5'- gGCCUcUAUCaGGCUGGcGUGGACCAGg-- -3'
miRNA:   3'- -UGGA-AUAG-CUGGCC-UAUUUGGUCagg -5'
18509 3' -48.5 NC_004681.1 + 43126 0.66 0.988978
Target:  5'- -gCUUAUCu-CCGGGUuguCCAGUCg -3'
miRNA:   3'- ugGAAUAGcuGGCCUAuuuGGUCAGg -5'
18509 3' -48.5 NC_004681.1 + 46522 0.66 0.99284
Target:  5'- aACCUgcgCGGuuGGGUGAGCUc-UCCa -3'
miRNA:   3'- -UGGAauaGCUggCCUAUUUGGucAGG- -5'
18509 3' -48.5 NC_004681.1 + 47043 0.68 0.975511
Target:  5'- cGCCUUGUCGcCCGaGucggcggccucaccGUagguagugccagcGAACCAGUCCc -3'
miRNA:   3'- -UGGAAUAGCuGGC-C--------------UA-------------UUUGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 47322 0.66 0.990412
Target:  5'- --aUUGUCGGCggugCGGAUGGACUGG-CCa -3'
miRNA:   3'- uggAAUAGCUG----GCCUAUUUGGUCaGG- -5'
18509 3' -48.5 NC_004681.1 + 54805 0.72 0.869427
Target:  5'- cACC--GUCGAgUGGAUGAACCAGaacgacaUCCc -3'
miRNA:   3'- -UGGaaUAGCUgGCCUAUUUGGUC-------AGG- -5'
18509 3' -48.5 NC_004681.1 + 57143 0.67 0.987382
Target:  5'- uUCUUGUCGGacaaGGAgauuGGCCGGUCa -3'
miRNA:   3'- uGGAAUAGCUgg--CCUau--UUGGUCAGg -5'
18509 3' -48.5 NC_004681.1 + 58024 0.65 0.993758
Target:  5'- uCCUugaUGUCGAgguauucCUGGu---ACCAGUCCg -3'
miRNA:   3'- uGGA---AUAGCU-------GGCCuauuUGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 59534 1.14 0.003841
Target:  5'- gACCUUAUCGACCGGAUAAACCAGUCCa -3'
miRNA:   3'- -UGGAAUAGCUGGCCUAUUUGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 60869 0.66 0.99284
Target:  5'- cCCUUAUgcgUGGCUGGucAAGCUAGUCa -3'
miRNA:   3'- uGGAAUA---GCUGGCCuaUUUGGUCAGg -5'
18509 3' -48.5 NC_004681.1 + 64956 0.67 0.982398
Target:  5'- aGCCUUcacCaGCUGGGUGAggucgcggcgcagguACCAGUCCc -3'
miRNA:   3'- -UGGAAua-GcUGGCCUAUU---------------UGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 65063 0.68 0.973809
Target:  5'- cGCgUaGUCGugCGGGUAGuagacguCCAGcUCCa -3'
miRNA:   3'- -UGgAaUAGCugGCCUAUUu------GGUC-AGG- -5'
18509 3' -48.5 NC_004681.1 + 66004 0.76 0.681725
Target:  5'- gACCUUgcgGUCGcCCaGGAUcaugcgcgaGGACCAGUCCa -3'
miRNA:   3'- -UGGAA---UAGCuGG-CCUA---------UUUGGUCAGG- -5'
18509 3' -48.5 NC_004681.1 + 71929 0.69 0.956188
Target:  5'- uCCUcAUCGGCCGGAUu-GCCGuaugCCu -3'
miRNA:   3'- uGGAaUAGCUGGCCUAuuUGGUca--GG- -5'
18509 3' -48.5 NC_004681.1 + 74197 0.66 0.99284
Target:  5'- aGCCUcaugcGUCGGgCGGAUGGACUgauGGaCCg -3'
miRNA:   3'- -UGGAa----UAGCUgGCCUAUUUGG---UCaGG- -5'
18509 3' -48.5 NC_004681.1 + 74829 0.72 0.853592
Target:  5'- cACCcg--CGGCCGGAUGcuCCAGUgCu -3'
miRNA:   3'- -UGGaauaGCUGGCCUAUuuGGUCAgG- -5'
18509 3' -48.5 NC_004681.1 + 75159 0.66 0.99284
Target:  5'- cGCCggUAUCGccuACCGGGUcgaGGACaCAGaCCa -3'
miRNA:   3'- -UGGa-AUAGC---UGGCCUA---UUUG-GUCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.