Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 75159 | 0.66 | 0.99284 |
Target: 5'- cGCCggUAUCGccuACCGGGUcgaGGACaCAGaCCa -3' miRNA: 3'- -UGGa-AUAGC---UGGCCUA---UUUG-GUCaGG- -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 74829 | 0.72 | 0.853592 |
Target: 5'- cACCcg--CGGCCGGAUGcuCCAGUgCu -3' miRNA: 3'- -UGGaauaGCUGGCCUAUuuGGUCAgG- -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 74197 | 0.66 | 0.99284 |
Target: 5'- aGCCUcaugcGUCGGgCGGAUGGACUgauGGaCCg -3' miRNA: 3'- -UGGAa----UAGCUgGCCUAUUUGG---UCaGG- -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 71929 | 0.69 | 0.956188 |
Target: 5'- uCCUcAUCGGCCGGAUu-GCCGuaugCCu -3' miRNA: 3'- uGGAaUAGCUGGCCUAuuUGGUca--GG- -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 66004 | 0.76 | 0.681725 |
Target: 5'- gACCUUgcgGUCGcCCaGGAUcaugcgcgaGGACCAGUCCa -3' miRNA: 3'- -UGGAA---UAGCuGG-CCUA---------UUUGGUCAGG- -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 65063 | 0.68 | 0.973809 |
Target: 5'- cGCgUaGUCGugCGGGUAGuagacguCCAGcUCCa -3' miRNA: 3'- -UGgAaUAGCugGCCUAUUu------GGUC-AGG- -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 64956 | 0.67 | 0.982398 |
Target: 5'- aGCCUUcacCaGCUGGGUGAggucgcggcgcagguACCAGUCCc -3' miRNA: 3'- -UGGAAua-GcUGGCCUAUU---------------UGGUCAGG- -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 60869 | 0.66 | 0.99284 |
Target: 5'- cCCUUAUgcgUGGCUGGucAAGCUAGUCa -3' miRNA: 3'- uGGAAUA---GCUGGCCuaUUUGGUCAGg -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 59534 | 1.14 | 0.003841 |
Target: 5'- gACCUUAUCGACCGGAUAAACCAGUCCa -3' miRNA: 3'- -UGGAAUAGCUGGCCUAUUUGGUCAGG- -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 58024 | 0.65 | 0.993758 |
Target: 5'- uCCUugaUGUCGAgguauucCUGGu---ACCAGUCCg -3' miRNA: 3'- uGGA---AUAGCU-------GGCCuauuUGGUCAGG- -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 57143 | 0.67 | 0.987382 |
Target: 5'- uUCUUGUCGGacaaGGAgauuGGCCGGUCa -3' miRNA: 3'- uGGAAUAGCUgg--CCUau--UUGGUCAGg -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 54805 | 0.72 | 0.869427 |
Target: 5'- cACC--GUCGAgUGGAUGAACCAGaacgacaUCCc -3' miRNA: 3'- -UGGaaUAGCUgGCCUAUUUGGUC-------AGG- -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 47322 | 0.66 | 0.990412 |
Target: 5'- --aUUGUCGGCggugCGGAUGGACUGG-CCa -3' miRNA: 3'- uggAAUAGCUG----GCCUAUUUGGUCaGG- -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 47043 | 0.68 | 0.975511 |
Target: 5'- cGCCUUGUCGcCCGaGucggcggccucaccGUagguagugccagcGAACCAGUCCc -3' miRNA: 3'- -UGGAAUAGCuGGC-C--------------UA-------------UUUGGUCAGG- -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 46522 | 0.66 | 0.99284 |
Target: 5'- aACCUgcgCGGuuGGGUGAGCUc-UCCa -3' miRNA: 3'- -UGGAauaGCUggCCUAUUUGGucAGG- -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 43126 | 0.66 | 0.988978 |
Target: 5'- -gCUUAUCu-CCGGGUuguCCAGUCg -3' miRNA: 3'- ugGAAUAGcuGGCCUAuuuGGUCAGg -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 42237 | 0.68 | 0.976599 |
Target: 5'- gGCCUcUAUCaGGCUGGcGUGGACCAGg-- -3' miRNA: 3'- -UGGA-AUAG-CUGGCC-UAUUUGGUCagg -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 39267 | 0.66 | 0.99284 |
Target: 5'- cAUCUccgCGGcCCGGAU--GCCGGUCUc -3' miRNA: 3'- -UGGAauaGCU-GGCCUAuuUGGUCAGG- -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 33133 | 0.67 | 0.979165 |
Target: 5'- aGCCagGUUGACgGGGgcgauGCCAuGUCCc -3' miRNA: 3'- -UGGaaUAGCUGgCCUauu--UGGU-CAGG- -5' |
|||||||
18509 | 3' | -48.5 | NC_004681.1 | + | 32180 | 0.79 | 0.48402 |
Target: 5'- gACCUUGUCGGCCGGGU---CCAGcUUCu -3' miRNA: 3'- -UGGAAUAGCUGGCCUAuuuGGUC-AGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home