miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18509 5' -53.5 NC_004681.1 + 17905 0.66 0.866738
Target:  5'- --cGGCcGCCGCGUugauGUCGGCCUGc- -3'
miRNA:   3'- cucCUGaUGGCGUAu---CAGCUGGACua -5'
18509 5' -53.5 NC_004681.1 + 51965 0.66 0.858568
Target:  5'- cGGGGACcaggugccUGCCGCGaggAGUCGG-CUGAa -3'
miRNA:   3'- -CUCCUG--------AUGGCGUa--UCAGCUgGACUa -5'
18509 5' -53.5 NC_004681.1 + 73207 0.66 0.85016
Target:  5'- -cGGACUACCGaguCGUAGUCG--CUGAa -3'
miRNA:   3'- cuCCUGAUGGC---GUAUCAGCugGACUa -5'
18509 5' -53.5 NC_004681.1 + 19341 0.66 0.85016
Target:  5'- cGAGGACgagACCGacgAGuUCGACCgGGUc -3'
miRNA:   3'- -CUCCUGa--UGGCguaUC-AGCUGGaCUA- -5'
18509 5' -53.5 NC_004681.1 + 58234 0.66 0.841523
Target:  5'- gGGGGACUACCGCcauggAGUCuuCgCUGGc -3'
miRNA:   3'- -CUCCUGAUGGCGua---UCAGcuG-GACUa -5'
18509 5' -53.5 NC_004681.1 + 69287 0.66 0.832665
Target:  5'- gGAGGAUUGCCGCAa----GACCaGAUg -3'
miRNA:   3'- -CUCCUGAUGGCGUaucagCUGGaCUA- -5'
18509 5' -53.5 NC_004681.1 + 7349 0.66 0.832665
Target:  5'- -uGGACgGCCGCGUcGUggaUGGCCUGGa -3'
miRNA:   3'- cuCCUGaUGGCGUAuCA---GCUGGACUa -5'
18509 5' -53.5 NC_004681.1 + 371 0.67 0.804861
Target:  5'- cGAGGACgagcCCGC--GGUCaaGACCUGGg -3'
miRNA:   3'- -CUCCUGau--GGCGuaUCAG--CUGGACUa -5'
18509 5' -53.5 NC_004681.1 + 52865 0.67 0.804861
Target:  5'- cGAGGuGCUGuCCGCcaGGUCGACCa--- -3'
miRNA:   3'- -CUCC-UGAU-GGCGuaUCAGCUGGacua -5'
18509 5' -53.5 NC_004681.1 + 36894 0.67 0.804861
Target:  5'- aGAGGACUGCCuaGUcagcggggggcGGgccagCGGCCUGGc -3'
miRNA:   3'- -CUCCUGAUGGcgUA-----------UCa----GCUGGACUa -5'
18509 5' -53.5 NC_004681.1 + 75547 0.68 0.7653
Target:  5'- cGAGGGCUGuCCGCAUAGgcacgUGGgCUGc- -3'
miRNA:   3'- -CUCCUGAU-GGCGUAUCa----GCUgGACua -5'
18509 5' -53.5 NC_004681.1 + 71739 0.68 0.744651
Target:  5'- -uGGACUACCGCGaGGaaGGCuCUGAg -3'
miRNA:   3'- cuCCUGAUGGCGUaUCagCUG-GACUa -5'
18509 5' -53.5 NC_004681.1 + 67720 0.7 0.636373
Target:  5'- -uGGcGCUACCGCAUGGcCaACCUGGUc -3'
miRNA:   3'- cuCC-UGAUGGCGUAUCaGcUGGACUA- -5'
18509 5' -53.5 NC_004681.1 + 39348 0.7 0.625348
Target:  5'- cGAGGG--GCCGCuGUGGaUCGGCCUGGg -3'
miRNA:   3'- -CUCCUgaUGGCG-UAUC-AGCUGGACUa -5'
18509 5' -53.5 NC_004681.1 + 52747 0.74 0.407392
Target:  5'- -cGGuCUucacgcGCUGCAUGGUCGACCUGGc -3'
miRNA:   3'- cuCCuGA------UGGCGUAUCAGCUGGACUa -5'
18509 5' -53.5 NC_004681.1 + 59572 1.05 0.003503
Target:  5'- aGAGGACUACCGCAUAGUCGACCUGAUc -3'
miRNA:   3'- -CUCCUGAUGGCGUAUCAGCUGGACUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.