miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1851 3' -55.2 NC_001347.2 + 3498 0.66 0.971929
Target:  5'- cCCACCucGGCAU-GC-CGGCgcCGGGCg -3'
miRNA:   3'- -GGUGGucCCGUAgCGuGUCGa-GUUCG- -5'
1851 3' -55.2 NC_001347.2 + 51572 0.66 0.971929
Target:  5'- gCCACCGGGGCucaGC-CuuCUCAcGCc -3'
miRNA:   3'- -GGUGGUCCCGuagCGuGucGAGUuCG- -5'
1851 3' -55.2 NC_001347.2 + 50232 0.66 0.971929
Target:  5'- gCGgCGGGcaGCAUCGCGuuGCUCA-GCc -3'
miRNA:   3'- gGUgGUCC--CGUAGCGUguCGAGUuCG- -5'
1851 3' -55.2 NC_001347.2 + 50015 0.66 0.971929
Target:  5'- aCCGCagCGGuGGCuggagaaGCGCAGCgucggCGAGCg -3'
miRNA:   3'- -GGUG--GUC-CCGuag----CGUGUCGa----GUUCG- -5'
1851 3' -55.2 NC_001347.2 + 171222 0.66 0.969096
Target:  5'- gCCACCAuGGGCGcggcgguuuuggUgGCGCGGcCUCcuccucucugcuGAGCu -3'
miRNA:   3'- -GGUGGU-CCCGU------------AgCGUGUC-GAG------------UUCG- -5'
1851 3' -55.2 NC_001347.2 + 45148 0.66 0.969096
Target:  5'- gCCGCC-GGGCG--GCACGGg-CAAGUg -3'
miRNA:   3'- -GGUGGuCCCGUagCGUGUCgaGUUCG- -5'
1851 3' -55.2 NC_001347.2 + 104562 0.66 0.969096
Target:  5'- aCGCCu--GCAgcUCGCGCAGCUCccguccucgcuAGGCu -3'
miRNA:   3'- gGUGGuccCGU--AGCGUGUCGAG-----------UUCG- -5'
1851 3' -55.2 NC_001347.2 + 154254 0.66 0.965115
Target:  5'- aCCACgCAguagacGGGCAgaucaaagagacggUgGCGCucGCUCAGGCg -3'
miRNA:   3'- -GGUG-GU------CCCGU--------------AgCGUGu-CGAGUUCG- -5'
1851 3' -55.2 NC_001347.2 + 59954 0.66 0.962829
Target:  5'- gCUACUGGGGCAaguuUCGCuuuuGCGGCguaCAGGa -3'
miRNA:   3'- -GGUGGUCCCGU----AGCG----UGUCGa--GUUCg -5'
1851 3' -55.2 NC_001347.2 + 123944 0.66 0.962829
Target:  5'- aCCACCAcgaccaugauGGGCGUCGC-CAGUa----- -3'
miRNA:   3'- -GGUGGU----------CCCGUAGCGuGUCGaguucg -5'
1851 3' -55.2 NC_001347.2 + 192170 0.66 0.960788
Target:  5'- cCCGuCCAgcGGGCAguacccgaacacggCGCcCAGCUCGuccAGCa -3'
miRNA:   3'- -GGU-GGU--CCCGUa-------------GCGuGUCGAGU---UCG- -5'
1851 3' -55.2 NC_001347.2 + 43884 0.66 0.959386
Target:  5'- aCCACCGuGGUGUaa-ACAGCUgCGGGCa -3'
miRNA:   3'- -GGUGGUcCCGUAgcgUGUCGA-GUUCG- -5'
1851 3' -55.2 NC_001347.2 + 125642 0.66 0.959386
Target:  5'- aCC-CCuGGGCcUCGCAagcCGGCUgucUGAGCg -3'
miRNA:   3'- -GGuGGuCCCGuAGCGU---GUCGA---GUUCG- -5'
1851 3' -55.2 NC_001347.2 + 132640 0.66 0.959386
Target:  5'- -uGCCc-GGCAcgUCGUACAGCUCGucccuGCu -3'
miRNA:   3'- ggUGGucCCGU--AGCGUGUCGAGUu----CG- -5'
1851 3' -55.2 NC_001347.2 + 142437 0.66 0.95903
Target:  5'- aCCAgCAGGuaggagauagagaGC-UCGCAgAGCUCGGGa -3'
miRNA:   3'- -GGUgGUCC-------------CGuAGCGUgUCGAGUUCg -5'
1851 3' -55.2 NC_001347.2 + 100326 0.67 0.955729
Target:  5'- aCCACCaggacggcuGGGGCGaccaUUGCAgCAcGCUCAaacGGCu -3'
miRNA:   3'- -GGUGG---------UCCCGU----AGCGU-GU-CGAGU---UCG- -5'
1851 3' -55.2 NC_001347.2 + 191805 0.67 0.955729
Target:  5'- gCCACCGcgcGGGCAgcaccgCGCcCAGCgCcAGCc -3'
miRNA:   3'- -GGUGGU---CCCGUa-----GCGuGUCGaGuUCG- -5'
1851 3' -55.2 NC_001347.2 + 142970 0.67 0.954589
Target:  5'- uCCGgaUAGGGCucgcugaggcuguaAUCGCACAGCgc-GGCg -3'
miRNA:   3'- -GGUg-GUCCCG--------------UAGCGUGUCGaguUCG- -5'
1851 3' -55.2 NC_001347.2 + 154862 0.67 0.949423
Target:  5'- gCGgCAGcGGCgcagagcgaacucacGUCGgGCAGCUCAAcGCg -3'
miRNA:   3'- gGUgGUC-CCG---------------UAGCgUGUCGAGUU-CG- -5'
1851 3' -55.2 NC_001347.2 + 135185 0.67 0.947759
Target:  5'- gCGCCcGaGGCGUCGCACAugacGUcuGAGCg -3'
miRNA:   3'- gGUGGuC-CCGUAGCGUGU----CGagUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.