miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1851 5' -56.8 NC_001347.2 + 116583 0.66 0.941903
Target:  5'- cGGACUgacGGGCCCgCGCGAaa-CCAGCu -3'
miRNA:   3'- -CUUGA---CCUGGGgGUGCUcuaGGUCGu -5'
1851 5' -56.8 NC_001347.2 + 100858 0.66 0.941903
Target:  5'- cGAACUGGACgCCauggACGAGGacgaacuaCAGCAa -3'
miRNA:   3'- -CUUGACCUGgGGg---UGCUCUag------GUCGU- -5'
1851 5' -56.8 NC_001347.2 + 227635 0.66 0.922186
Target:  5'- gGGACUGGACUUggCCACGgugguuauGGAggCCGGCGg -3'
miRNA:   3'- -CUUGACCUGGG--GGUGC--------UCUa-GGUCGU- -5'
1851 5' -56.8 NC_001347.2 + 125956 0.67 0.91097
Target:  5'- cGAGgUGGACCgCU---GGAUCCGGCAc -3'
miRNA:   3'- -CUUgACCUGGgGGugcUCUAGGUCGU- -5'
1851 5' -56.8 NC_001347.2 + 115589 0.67 0.884522
Target:  5'- -cACcGGcaagaugcgcauuACCCCCGacgccuuCGAGAUCCAGCGg -3'
miRNA:   3'- cuUGaCC-------------UGGGGGU-------GCUCUAGGUCGU- -5'
1851 5' -56.8 NC_001347.2 + 154111 0.68 0.872029
Target:  5'- gGAGCUGGGCggCCgCACGAagcGAUCCAcGUAg -3'
miRNA:   3'- -CUUGACCUG--GGgGUGCU---CUAGGU-CGU- -5'
1851 5' -56.8 NC_001347.2 + 224832 0.68 0.841948
Target:  5'- uAACUGGAacaCCACGcGGUCCGGCu -3'
miRNA:   3'- cUUGACCUgggGGUGCuCUAGGUCGu -5'
1851 5' -56.8 NC_001347.2 + 55533 0.69 0.825799
Target:  5'- aGAACUGGGCUaugUCCGCuucGAGA-CCGGCGg -3'
miRNA:   3'- -CUUGACCUGG---GGGUG---CUCUaGGUCGU- -5'
1851 5' -56.8 NC_001347.2 + 94356 0.69 0.808983
Target:  5'- gGAACcgGGACCCCgguGCGGGGgucCCAGCc -3'
miRNA:   3'- -CUUGa-CCUGGGGg--UGCUCUa--GGUCGu -5'
1851 5' -56.8 NC_001347.2 + 223887 0.74 0.549169
Target:  5'- -cACUGGACCgCCACGuauUCCAGCc -3'
miRNA:   3'- cuUGACCUGGgGGUGCucuAGGUCGu -5'
1851 5' -56.8 NC_001347.2 + 94299 0.74 0.545282
Target:  5'- cGAGCggggggaggggagGGACCCCCGgcCGAGGUCCggAGCGg -3'
miRNA:   3'- -CUUGa------------CCUGGGGGU--GCUCUAGG--UCGU- -5'
1851 5' -56.8 NC_001347.2 + 144351 0.79 0.318457
Target:  5'- cGAACUGGAUgCCCgGCGAGAcgCCGGCGc -3'
miRNA:   3'- -CUUGACCUG-GGGgUGCUCUa-GGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.