miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18510 3' -57.7 NC_004681.1 + 60694 0.66 0.694314
Target:  5'- --gUGCCGcagcGGCggCCUCGUCGAGCa -3'
miRNA:   3'- cugACGGCc---CUGuaGGAGCGGCUUGa -5'
18510 3' -57.7 NC_004681.1 + 51306 0.66 0.688032
Target:  5'- uGACgGCCGGGgugGCGUUCUuggagagaagcauggCGCCGAggACUg -3'
miRNA:   3'- -CUGaCGGCCC---UGUAGGA---------------GCGGCU--UGA- -5'
18510 3' -57.7 NC_004681.1 + 63276 0.66 0.683834
Target:  5'- ---cGCCGcGGACAUCagggUGUCGAGCg -3'
miRNA:   3'- cugaCGGC-CCUGUAGga--GCGGCUUGa -5'
18510 3' -57.7 NC_004681.1 + 1303 0.66 0.683833
Target:  5'- gGACgaGCUGGccGACGaCCUCGCCGAc-- -3'
miRNA:   3'- -CUGa-CGGCC--CUGUaGGAGCGGCUuga -5'
18510 3' -57.7 NC_004681.1 + 16585 0.66 0.641551
Target:  5'- -gUUGCCGGGGCG-CggCGCCGAGu- -3'
miRNA:   3'- cuGACGGCCCUGUaGgaGCGGCUUga -5'
18510 3' -57.7 NC_004681.1 + 17145 0.68 0.567569
Target:  5'- -cUUGUCGaGGucgaaGUCCUUGCCGAACUu -3'
miRNA:   3'- cuGACGGC-CCug---UAGGAGCGGCUUGA- -5'
18510 3' -57.7 NC_004681.1 + 11469 0.68 0.561302
Target:  5'- gGACUucgucaGCCaGGucgccagccucaucaACGUCCUUGCCGAACa -3'
miRNA:   3'- -CUGA------CGGcCC---------------UGUAGGAGCGGCUUGa -5'
18510 3' -57.7 NC_004681.1 + 22466 0.68 0.546756
Target:  5'- cGAC-GUCGGGGagGUCCUCGCCGu--- -3'
miRNA:   3'- -CUGaCGGCCCUg-UAGGAGCGGCuuga -5'
18510 3' -57.7 NC_004681.1 + 1333 0.68 0.526191
Target:  5'- gGGCUGCCucaagccguGGGACGUCUacauguUCGCCGuguuCUg -3'
miRNA:   3'- -CUGACGG---------CCCUGUAGG------AGCGGCuu--GA- -5'
18510 3' -57.7 NC_004681.1 + 33279 0.74 0.26315
Target:  5'- cGCUGCCGGGuguCAUCgaCGCCGGucGCg -3'
miRNA:   3'- cUGACGGCCCu--GUAGgaGCGGCU--UGa -5'
18510 3' -57.7 NC_004681.1 + 59862 0.96 0.007357
Target:  5'- cGACUGCCGGGACAUCCUC-CCGAACUu -3'
miRNA:   3'- -CUGACGGCCCUGUAGGAGcGGCUUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.