miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18510 5' -54.9 NC_004681.1 + 17345 0.66 0.858457
Target:  5'- gCGGCGaccUGACUCaagGUC-UCGCCGACu -3'
miRNA:   3'- gGUCGCa--GCUGAGg--UAGcAGUGGCUG- -5'
18510 5' -54.9 NC_004681.1 + 62783 0.66 0.858457
Target:  5'- uCCGGCGcCGACgacgCAUCGUCAgCa-- -3'
miRNA:   3'- -GGUCGCaGCUGag--GUAGCAGUgGcug -5'
18510 5' -54.9 NC_004681.1 + 31995 0.66 0.85034
Target:  5'- gCCAGCaUCGGCUCgCugAUCGgCGCCG-Cg -3'
miRNA:   3'- -GGUCGcAGCUGAG-G--UAGCaGUGGCuG- -5'
18510 5' -54.9 NC_004681.1 + 53545 0.66 0.85034
Target:  5'- gCCAGCGcgucgucaUCGAgUgcaagaaCGUCGcCACCGGCa -3'
miRNA:   3'- -GGUCGC--------AGCUgAg------GUAGCaGUGGCUG- -5'
18510 5' -54.9 NC_004681.1 + 40241 0.66 0.849516
Target:  5'- gCGGCGUCGcggccuGC-CUGUCccgggcgGUCACCGACc -3'
miRNA:   3'- gGUCGCAGC------UGaGGUAG-------CAGUGGCUG- -5'
18510 5' -54.9 NC_004681.1 + 26317 0.66 0.833471
Target:  5'- gCCGG-GUCGAUUgUGUCGaCGCUGACc -3'
miRNA:   3'- -GGUCgCAGCUGAgGUAGCaGUGGCUG- -5'
18510 5' -54.9 NC_004681.1 + 71808 0.66 0.832607
Target:  5'- gCCAGCGcucauagcgguauUCGAgUCCGUUGUaCGCCu-- -3'
miRNA:   3'- -GGUCGC-------------AGCUgAGGUAGCA-GUGGcug -5'
18510 5' -54.9 NC_004681.1 + 16921 0.67 0.815811
Target:  5'- gUAGC-UCGACUCCG-CGgaguaCACCGAg -3'
miRNA:   3'- gGUCGcAGCUGAGGUaGCa----GUGGCUg -5'
18510 5' -54.9 NC_004681.1 + 10184 0.67 0.815811
Target:  5'- aCCGGCcucccCGGCUCCGagUGgagCACCGGCc -3'
miRNA:   3'- -GGUCGca---GCUGAGGUa-GCa--GUGGCUG- -5'
18510 5' -54.9 NC_004681.1 + 67803 0.67 0.815811
Target:  5'- gUAGCGccagCGGC-CCuuGUCGUCgguGCCGACg -3'
miRNA:   3'- gGUCGCa---GCUGaGG--UAGCAG---UGGCUG- -5'
18510 5' -54.9 NC_004681.1 + 39961 0.67 0.806706
Target:  5'- uCCGcgcGCGUCGGCgCCGggUCaacUCACCGGCu -3'
miRNA:   3'- -GGU---CGCAGCUGaGGU--AGc--AGUGGCUG- -5'
18510 5' -54.9 NC_004681.1 + 24822 0.67 0.806706
Target:  5'- gCCGGUGUCGACUg---CGaUGCCGACc -3'
miRNA:   3'- -GGUCGCAGCUGAgguaGCaGUGGCUG- -5'
18510 5' -54.9 NC_004681.1 + 4031 0.67 0.79743
Target:  5'- gCCAGCGaaGccCUCgguGUCGUUACCGGCa -3'
miRNA:   3'- -GGUCGCagCu-GAGg--UAGCAGUGGCUG- -5'
18510 5' -54.9 NC_004681.1 + 12195 0.67 0.787992
Target:  5'- cCCGGCGUCgGGCUucCCcgCG-CGCCG-Ca -3'
miRNA:   3'- -GGUCGCAG-CUGA--GGuaGCaGUGGCuG- -5'
18510 5' -54.9 NC_004681.1 + 32342 0.67 0.787992
Target:  5'- aCCGGgaGaUUGGCgaCAUCGUCACCGAUc -3'
miRNA:   3'- -GGUCg-C-AGCUGagGUAGCAGUGGCUG- -5'
18510 5' -54.9 NC_004681.1 + 22479 0.67 0.775498
Target:  5'- aCCAGCGUCcACUCgAcgucggggagguccUCGccgugggggauuUCACCGACc -3'
miRNA:   3'- -GGUCGCAGcUGAGgU--------------AGC------------AGUGGCUG- -5'
18510 5' -54.9 NC_004681.1 + 24717 0.67 0.768671
Target:  5'- gCCAuGgGUCGGCaUCgcaGUCGaCACCGGCa -3'
miRNA:   3'- -GGU-CgCAGCUG-AGg--UAGCaGUGGCUG- -5'
18510 5' -54.9 NC_004681.1 + 28801 0.68 0.748824
Target:  5'- gCCAGCGaaCGGCagCC-UCGUCauauACCGACu -3'
miRNA:   3'- -GGUCGCa-GCUGa-GGuAGCAG----UGGCUG- -5'
18510 5' -54.9 NC_004681.1 + 65721 0.68 0.738729
Target:  5'- cUCAGCGaggcCGACaUCGUCGUCACCu-- -3'
miRNA:   3'- -GGUCGCa---GCUGaGGUAGCAGUGGcug -5'
18510 5' -54.9 NC_004681.1 + 3874 0.68 0.728534
Target:  5'- cCCAGUG-CaGACUUCG-CGUCAgCGGCg -3'
miRNA:   3'- -GGUCGCaG-CUGAGGUaGCAGUgGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.