miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18511 3' -62.2 NC_004681.1 + 33286 0.66 0.470089
Target:  5'- gGGUGUcaUCGACGccGGUcgCGCCGCgGUGu -3'
miRNA:   3'- aCCACG--AGCUGCu-CCG--GCGGCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 14671 0.66 0.470089
Target:  5'- cGGUGCcgaaGGCGAcugcGGCCGUgGUgGCGg -3'
miRNA:   3'- aCCACGag--CUGCU----CCGGCGgCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 28016 0.66 0.470089
Target:  5'- -cGUGC-CGcCGAGGCC-CCGCgUGCc -3'
miRNA:   3'- acCACGaGCuGCUCCGGcGGCG-ACGc -5'
18511 3' -62.2 NC_004681.1 + 74696 0.66 0.470089
Target:  5'- uUGGUGCUUGGCaauGGCUuaUGCgugGCGu -3'
miRNA:   3'- -ACCACGAGCUGcu-CCGGcgGCGa--CGC- -5'
18511 3' -62.2 NC_004681.1 + 13509 0.66 0.460719
Target:  5'- aGcUGCUC-ACGguccAGGCCGUCGCcGCGg -3'
miRNA:   3'- aCcACGAGcUGC----UCCGGCGGCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 41167 0.66 0.450527
Target:  5'- cGGUGagcacaUCGGCGgcggcgccgaagaGGGCCGUCGCauggGUGg -3'
miRNA:   3'- aCCACg-----AGCUGC-------------UCCGGCGGCGa---CGC- -5'
18511 3' -62.2 NC_004681.1 + 17153 0.66 0.43322
Target:  5'- uUGGUGCUCuuguCGAGGUCgaaguccuuGCCGaacuuCUGCGa -3'
miRNA:   3'- -ACCACGAGcu--GCUCCGG---------CGGC-----GACGC- -5'
18511 3' -62.2 NC_004681.1 + 18209 0.66 0.43322
Target:  5'- cGGUGCcUGGcCGGGGgCGCCGaUGCc -3'
miRNA:   3'- aCCACGaGCU-GCUCCgGCGGCgACGc -5'
18511 3' -62.2 NC_004681.1 + 12497 0.66 0.424267
Target:  5'- ---gGCUCaccGACGAGcGUCGCCGCgGUGg -3'
miRNA:   3'- accaCGAG---CUGCUC-CGGCGGCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 32010 0.67 0.415426
Target:  5'- cGGgaugagGCccgCGAUGGcGGCCGCCGCgagGUa -3'
miRNA:   3'- aCCa-----CGa--GCUGCU-CCGGCGGCGa--CGc -5'
18511 3' -62.2 NC_004681.1 + 46937 0.67 0.406699
Target:  5'- gGGUGC-CGGgGcGGuuGCCGCgggGCu -3'
miRNA:   3'- aCCACGaGCUgCuCCggCGGCGa--CGc -5'
18511 3' -62.2 NC_004681.1 + 16363 0.67 0.406699
Target:  5'- gGGUGg-CGACGAGGgCGCCaaguggGUUGCc -3'
miRNA:   3'- aCCACgaGCUGCUCCgGCGG------CGACGc -5'
18511 3' -62.2 NC_004681.1 + 56123 0.67 0.404104
Target:  5'- cGGUGaaggCGAUgcgGAGGUCGCCcuccuuggcgucgcGCUGCGu -3'
miRNA:   3'- aCCACga--GCUG---CUCCGGCGG--------------CGACGC- -5'
18511 3' -62.2 NC_004681.1 + 67745 0.67 0.398088
Target:  5'- aUGGUGUugugcgacUCGAUGAGGCgCGUCGuCUuggacGCGa -3'
miRNA:   3'- -ACCACG--------AGCUGCUCCG-GCGGC-GA-----CGC- -5'
18511 3' -62.2 NC_004681.1 + 61777 0.67 0.389595
Target:  5'- uUGGagacCUCGGCGGcGGCCuCCGCgGCGg -3'
miRNA:   3'- -ACCac--GAGCUGCU-CCGGcGGCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 21647 0.67 0.372969
Target:  5'- aGGUGgaaUUCGGUGAGGCCaCCGC-GCGg -3'
miRNA:   3'- aCCAC---GAGCUGCUCCGGcGGCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 30147 0.68 0.364838
Target:  5'- gGGaGCUC--CGAGGCCgaugGCCGCgGCGg -3'
miRNA:   3'- aCCaCGAGcuGCUCCGG----CGGCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 60139 0.68 0.34119
Target:  5'- cGGUGCcagguGCGGGaGCCGCCGaagGCGa -3'
miRNA:   3'- aCCACGagc--UGCUC-CGGCGGCga-CGC- -5'
18511 3' -62.2 NC_004681.1 + 28905 0.68 0.34119
Target:  5'- cGGUauaUGACGAGGCUGCCGUUcGCu -3'
miRNA:   3'- aCCAcgaGCUGCUCCGGCGGCGA-CGc -5'
18511 3' -62.2 NC_004681.1 + 28250 0.68 0.34119
Target:  5'- cGGUgccgcugccgccGCUCGAucCGccGCCGCCGUUGCc -3'
miRNA:   3'- aCCA------------CGAGCU--GCucCGGCGGCGACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.