miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18511 3' -62.2 NC_004681.1 + 427 0.75 0.120853
Target:  5'- cGGUGgaCGACGAgGGCCuCCGCUGgGc -3'
miRNA:   3'- aCCACgaGCUGCU-CCGGcGGCGACgC- -5'
18511 3' -62.2 NC_004681.1 + 2028 0.74 0.127349
Target:  5'- aGGUGgUCGugGAgGGCgGCCGCaccGCGg -3'
miRNA:   3'- aCCACgAGCugCU-CCGgCGGCGa--CGC- -5'
18511 3' -62.2 NC_004681.1 + 7456 0.71 0.206931
Target:  5'- cGG-GCUUGGCggGAGGCuuCGCCGCgGCGg -3'
miRNA:   3'- aCCaCGAGCUG--CUCCG--GCGGCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 12260 0.71 0.212133
Target:  5'- cGGUGCUguggcCGAcuccCGAGGUCGCCcCUGUGg -3'
miRNA:   3'- aCCACGA-----GCU----GCUCCGGCGGcGACGC- -5'
18511 3' -62.2 NC_004681.1 + 12497 0.66 0.424267
Target:  5'- ---gGCUCaccGACGAGcGUCGCCGCgGUGg -3'
miRNA:   3'- accaCGAG---CUGCUC-CGGCGGCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 13509 0.66 0.460719
Target:  5'- aGcUGCUC-ACGguccAGGCCGUCGCcGCGg -3'
miRNA:   3'- aCcACGAGcUGC----UCCGGCGGCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 14568 0.69 0.277032
Target:  5'- --cUGCUCGGCgGAGGCgGCgCGCgcgGCGu -3'
miRNA:   3'- accACGAGCUG-CUCCGgCG-GCGa--CGC- -5'
18511 3' -62.2 NC_004681.1 + 14671 0.66 0.470089
Target:  5'- cGGUGCcgaaGGCGAcugcGGCCGUgGUgGCGg -3'
miRNA:   3'- aCCACGag--CUGCU----CCGGCGgCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 15770 0.72 0.20184
Target:  5'- gGcGUGCUCGACGucGCCGUuggCGuCUGCGu -3'
miRNA:   3'- aC-CACGAGCUGCucCGGCG---GC-GACGC- -5'
18511 3' -62.2 NC_004681.1 + 16026 0.69 0.304288
Target:  5'- cGGcUGCUgGcaaGGGcGCCGCCGCUGUc -3'
miRNA:   3'- aCC-ACGAgCug-CUC-CGGCGGCGACGc -5'
18511 3' -62.2 NC_004681.1 + 16363 0.67 0.406699
Target:  5'- gGGUGg-CGACGAGGgCGCCaaguggGUUGCc -3'
miRNA:   3'- aCCACgaGCUGCUCCgGCGG------CGACGc -5'
18511 3' -62.2 NC_004681.1 + 16775 0.69 0.297286
Target:  5'- cGGUGCUCG--GAGcGCCGUCGCcaGCa -3'
miRNA:   3'- aCCACGAGCugCUC-CGGCGGCGa-CGc -5'
18511 3' -62.2 NC_004681.1 + 17153 0.66 0.43322
Target:  5'- uUGGUGCUCuuguCGAGGUCgaaguccuuGCCGaacuuCUGCGa -3'
miRNA:   3'- -ACCACGAGcu--GCUCCGG---------CGGC-----GACGC- -5'
18511 3' -62.2 NC_004681.1 + 17917 0.7 0.257275
Target:  5'- cGGUGcCUUG-CGcGGCCGCCGCguugaugucggccUGCGu -3'
miRNA:   3'- aCCAC-GAGCuGCuCCGGCGGCG-------------ACGC- -5'
18511 3' -62.2 NC_004681.1 + 18209 0.66 0.43322
Target:  5'- cGGUGCcUGGcCGGGGgCGCCGaUGCc -3'
miRNA:   3'- aCCACGaGCU-GCUCCgGCGGCgACGc -5'
18511 3' -62.2 NC_004681.1 + 18500 0.7 0.245746
Target:  5'- gGGUGCgaaGGCGuuuGCCGCCGCgGCc -3'
miRNA:   3'- aCCACGag-CUGCuc-CGGCGGCGaCGc -5'
18511 3' -62.2 NC_004681.1 + 18736 0.68 0.333558
Target:  5'- aGG-GCgacggCGGCGAGGCCGCgCGUgacaccGCa -3'
miRNA:   3'- aCCaCGa----GCUGCUCCGGCG-GCGa-----CGc -5'
18511 3' -62.2 NC_004681.1 + 21647 0.67 0.372969
Target:  5'- aGGUGgaaUUCGGUGAGGCCaCCGC-GCGg -3'
miRNA:   3'- aCCAC---GAGCUGCUCCGGcGGCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 25179 0.7 0.264151
Target:  5'- aGGUGC-CGAgGAGGCUgagcgagguGCCGCccGCGc -3'
miRNA:   3'- aCCACGaGCUgCUCCGG---------CGGCGa-CGC- -5'
18511 3' -62.2 NC_004681.1 + 28016 0.66 0.470089
Target:  5'- -cGUGC-CGcCGAGGCC-CCGCgUGCc -3'
miRNA:   3'- acCACGaGCuGCUCCGGcGGCG-ACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.