Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18511 | 3' | -62.2 | NC_004681.1 | + | 74696 | 0.66 | 0.470089 |
Target: 5'- uUGGUGCUUGGCaauGGCUuaUGCgugGCGu -3' miRNA: 3'- -ACCACGAGCUGcu-CCGGcgGCGa--CGC- -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 67745 | 0.67 | 0.398088 |
Target: 5'- aUGGUGUugugcgacUCGAUGAGGCgCGUCGuCUuggacGCGa -3' miRNA: 3'- -ACCACG--------AGCUGCUCCG-GCGGC-GA-----CGC- -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 62070 | 0.7 | 0.25176 |
Target: 5'- aGGUGCaugcccgCGAUGAcGCUGCCGCccgGCGa -3' miRNA: 3'- aCCACGa------GCUGCUcCGGCGGCGa--CGC- -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 61777 | 0.67 | 0.389595 |
Target: 5'- uUGGagacCUCGGCGGcGGCCuCCGCgGCGg -3' miRNA: 3'- -ACCac--GAGCUGCU-CCGGcGGCGaCGC- -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 61340 | 0.68 | 0.326051 |
Target: 5'- aGGUGgagguaGACGAgaucGGcCCGUCGCUGCGg -3' miRNA: 3'- aCCACgag---CUGCU----CC-GGCGGCGACGC- -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 60589 | 1.09 | 0.000351 |
Target: 5'- gUGGUGCUCGACGAGGCCGCCGCUGCGg -3' miRNA: 3'- -ACCACGAGCUGCUCCGGCGGCGACGC- -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 60178 | 0.69 | 0.290409 |
Target: 5'- cUGGUGCUgagCG-CGAGGugaucggcacCCGCCGC-GCGg -3' miRNA: 3'- -ACCACGA---GCuGCUCC----------GGCGGCGaCGC- -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 60139 | 0.68 | 0.34119 |
Target: 5'- cGGUGCcagguGCGGGaGCCGCCGaagGCGa -3' miRNA: 3'- aCCACGagc--UGCUC-CGGCGGCga-CGC- -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 58758 | 0.71 | 0.222875 |
Target: 5'- aGGUGUggcccgCGGCGcAGGCgGCCGUgGCGc -3' miRNA: 3'- aCCACGa-----GCUGC-UCCGgCGGCGaCGC- -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 56123 | 0.67 | 0.404104 |
Target: 5'- cGGUGaaggCGAUgcgGAGGUCGCCcuccuuggcgucgcGCUGCGu -3' miRNA: 3'- aCCACga--GCUG---CUCCGGCGG--------------CGACGC- -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 55980 | 0.68 | 0.333558 |
Target: 5'- cGGUGCUCGGCugccAGGCCcucaCGCaGCGc -3' miRNA: 3'- aCCACGAGCUGc---UCCGGcg--GCGaCGC- -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 51729 | 0.69 | 0.304288 |
Target: 5'- cUGGUGgUCGuCGGcGGCCGCCccgGC-GCGg -3' miRNA: 3'- -ACCACgAGCuGCU-CCGGCGG---CGaCGC- -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 46937 | 0.67 | 0.406699 |
Target: 5'- gGGUGC-CGGgGcGGuuGCCGCgggGCu -3' miRNA: 3'- aCCACGaGCUgCuCCggCGGCGa--CGc -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 44794 | 0.69 | 0.297286 |
Target: 5'- uUGGUGCgcgUGACGccGCCGUCGCcguUGCc -3' miRNA: 3'- -ACCACGa--GCUGCucCGGCGGCG---ACGc -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 41167 | 0.66 | 0.450527 |
Target: 5'- cGGUGagcacaUCGGCGgcggcgccgaagaGGGCCGUCGCauggGUGg -3' miRNA: 3'- aCCACg-----AGCUGC-------------UCCGGCGGCGa---CGC- -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 41072 | 0.74 | 0.127349 |
Target: 5'- aGGaGCUCGGCGAGGUCaagGCCauGCUGCa -3' miRNA: 3'- aCCaCGAGCUGCUCCGG---CGG--CGACGc -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 33286 | 0.66 | 0.470089 |
Target: 5'- gGGUGUcaUCGACGccGGUcgCGCCGCgGUGu -3' miRNA: 3'- aCCACG--AGCUGCu-CCG--GCGGCGaCGC- -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 32337 | 0.74 | 0.145024 |
Target: 5'- cGG-GCUagacACGAGGCCgcgcuGCCGCUGCGa -3' miRNA: 3'- aCCaCGAgc--UGCUCCGG-----CGGCGACGC- -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 32231 | 0.71 | 0.212133 |
Target: 5'- cUGGUcgUUGGCGuGGGCCGCCGCgGUGa -3' miRNA: 3'- -ACCAcgAGCUGC-UCCGGCGGCGaCGC- -5' |
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18511 | 3' | -62.2 | NC_004681.1 | + | 32010 | 0.67 | 0.415426 |
Target: 5'- cGGgaugagGCccgCGAUGGcGGCCGCCGCgagGUa -3' miRNA: 3'- aCCa-----CGa--GCUGCU-CCGGCGGCGa--CGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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