miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18511 3' -62.2 NC_004681.1 + 17917 0.7 0.257275
Target:  5'- cGGUGcCUUG-CGcGGCCGCCGCguugaugucggccUGCGu -3'
miRNA:   3'- aCCAC-GAGCuGCuCCGGCGGCG-------------ACGC- -5'
18511 3' -62.2 NC_004681.1 + 41072 0.74 0.127349
Target:  5'- aGGaGCUCGGCGAGGUCaagGCCauGCUGCa -3'
miRNA:   3'- aCCaCGAGCUGCUCCGG---CGG--CGACGc -5'
18511 3' -62.2 NC_004681.1 + 30361 0.74 0.133818
Target:  5'- cGGUGguCUCGACGccguaccGGccGCCGCCGCUGUGg -3'
miRNA:   3'- aCCAC--GAGCUGC-------UC--CGGCGGCGACGC- -5'
18511 3' -62.2 NC_004681.1 + 32337 0.74 0.145024
Target:  5'- cGG-GCUagacACGAGGCCgcgcuGCCGCUGCGa -3'
miRNA:   3'- aCCaCGAgc--UGCUCCGG-----CGGCGACGC- -5'
18511 3' -62.2 NC_004681.1 + 15770 0.72 0.20184
Target:  5'- gGcGUGCUCGACGucGCCGUuggCGuCUGCGu -3'
miRNA:   3'- aC-CACGAGCUGCucCGGCG---GC-GACGC- -5'
18511 3' -62.2 NC_004681.1 + 7456 0.71 0.206931
Target:  5'- cGG-GCUUGGCggGAGGCuuCGCCGCgGCGg -3'
miRNA:   3'- aCCaCGAGCUG--CUCCG--GCGGCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 32231 0.71 0.212133
Target:  5'- cUGGUcgUUGGCGuGGGCCGCCGCgGUGa -3'
miRNA:   3'- -ACCAcgAGCUGC-UCCGGCGGCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 58758 0.71 0.222875
Target:  5'- aGGUGUggcccgCGGCGcAGGCgGCCGUgGCGc -3'
miRNA:   3'- aCCACGa-----GCUGC-UCCGgCGGCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 18500 0.7 0.245746
Target:  5'- gGGUGCgaaGGCGuuuGCCGCCGCgGCc -3'
miRNA:   3'- aCCACGag-CUGCuc-CGGCGGCGaCGc -5'
18511 3' -62.2 NC_004681.1 + 61777 0.67 0.389595
Target:  5'- uUGGagacCUCGGCGGcGGCCuCCGCgGCGg -3'
miRNA:   3'- -ACCac--GAGCUGCU-CCGGcGGCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 28250 0.68 0.34119
Target:  5'- cGGUgccgcugccgccGCUCGAucCGccGCCGCCGUUGCc -3'
miRNA:   3'- aCCA------------CGAGCU--GCucCGGCGGCGACGc -5'
18511 3' -62.2 NC_004681.1 + 28905 0.68 0.34119
Target:  5'- cGGUauaUGACGAGGCUGCCGUUcGCu -3'
miRNA:   3'- aCCAcgaGCUGCUCCGGCGGCGA-CGc -5'
18511 3' -62.2 NC_004681.1 + 25179 0.7 0.264151
Target:  5'- aGGUGC-CGAgGAGGCUgagcgagguGCCGCccGCGc -3'
miRNA:   3'- aCCACGaGCUgCUCCGG---------CGGCGa-CGC- -5'
18511 3' -62.2 NC_004681.1 + 30147 0.68 0.364838
Target:  5'- gGGaGCUC--CGAGGCCgaugGCCGCgGCGg -3'
miRNA:   3'- aCCaCGAGcuGCUCCGG----CGGCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 14568 0.69 0.277032
Target:  5'- --cUGCUCGGCgGAGGCgGCgCGCgcgGCGu -3'
miRNA:   3'- accACGAGCUG-CUCCGgCG-GCGa--CGC- -5'
18511 3' -62.2 NC_004681.1 + 60139 0.68 0.34119
Target:  5'- cGGUGCcagguGCGGGaGCCGCCGaagGCGa -3'
miRNA:   3'- aCCACGagc--UGCUC-CGGCGGCga-CGC- -5'
18511 3' -62.2 NC_004681.1 + 21647 0.67 0.372969
Target:  5'- aGGUGgaaUUCGGUGAGGCCaCCGC-GCGg -3'
miRNA:   3'- aCCAC---GAGCUGCUCCGGcGGCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 14671 0.66 0.470089
Target:  5'- cGGUGCcgaaGGCGAcugcGGCCGUgGUgGCGg -3'
miRNA:   3'- aCCACGag--CUGCU----CCGGCGgCGaCGC- -5'
18511 3' -62.2 NC_004681.1 + 44794 0.69 0.297286
Target:  5'- uUGGUGCgcgUGACGccGCCGUCGCcguUGCc -3'
miRNA:   3'- -ACCACGa--GCUGCucCGGCGGCG---ACGc -5'
18511 3' -62.2 NC_004681.1 + 16775 0.69 0.297286
Target:  5'- cGGUGCUCG--GAGcGCCGUCGCcaGCa -3'
miRNA:   3'- aCCACGAGCugCUC-CGGCGGCGa-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.