Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18511 | 5' | -59.4 | NC_004681.1 | + | 60625 | 1.06 | 0.000818 |
Target: 5'- gAGCAGAGCGGCACCCUCAAGUCGGGUc -3' miRNA: 3'- -UCGUCUCGCCGUGGGAGUUCAGCCCA- -5' |
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18511 | 5' | -59.4 | NC_004681.1 | + | 62088 | 0.66 | 0.55632 |
Target: 5'- uGGCGGccuccaugGGCGGCAUCCUgCugcAGUCGGuGg -3' miRNA: 3'- -UCGUC--------UCGCCGUGGGA-Gu--UCAGCC-Ca -5' |
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18511 | 5' | -59.4 | NC_004681.1 | + | 66655 | 0.66 | 0.535706 |
Target: 5'- gGGCAucGGGgGGUACCCgagGGGcCGGGUg -3' miRNA: 3'- -UCGU--CUCgCCGUGGGag-UUCaGCCCA- -5' |
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18511 | 5' | -59.4 | NC_004681.1 | + | 25238 | 0.66 | 0.535706 |
Target: 5'- cGGCGGccaUGGCGCCCgcggCGgcGGUUGGGUg -3' miRNA: 3'- -UCGUCuc-GCCGUGGGa---GU--UCAGCCCA- -5' |
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18511 | 5' | -59.4 | NC_004681.1 | + | 57829 | 0.67 | 0.505314 |
Target: 5'- gAGCGGGGCuGGCcccuCCCUCucGcUUGGGa -3' miRNA: 3'- -UCGUCUCG-CCGu---GGGAGuuC-AGCCCa -5' |
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18511 | 5' | -59.4 | NC_004681.1 | + | 2643 | 0.67 | 0.475686 |
Target: 5'- cGCGGA-CGGCACCCUagcc-CGGGUc -3' miRNA: 3'- uCGUCUcGCCGUGGGAguucaGCCCA- -5' |
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18511 | 5' | -59.4 | NC_004681.1 | + | 50886 | 0.68 | 0.466002 |
Target: 5'- aAGCAG-GCGGCcuccaauaCUUCGAGUCGGa- -3' miRNA: 3'- -UCGUCuCGCCGug------GGAGUUCAGCCca -5' |
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18511 | 5' | -59.4 | NC_004681.1 | + | 39183 | 0.69 | 0.401297 |
Target: 5'- cGCGGAGauGCucGCCCUCGAcGUCGaGGa -3' miRNA: 3'- uCGUCUCgcCG--UGGGAGUU-CAGC-CCa -5' |
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18511 | 5' | -59.4 | NC_004681.1 | + | 24888 | 0.69 | 0.392528 |
Target: 5'- uGGCgAGGGCGGCgACCCcggCAAGU-GGGc -3' miRNA: 3'- -UCG-UCUCGCCG-UGGGa--GUUCAgCCCa -5' |
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18511 | 5' | -59.4 | NC_004681.1 | + | 56342 | 0.69 | 0.366982 |
Target: 5'- aAGguGcAGC-GCGCCUUCAAG-CGGGUg -3' miRNA: 3'- -UCguC-UCGcCGUGGGAGUUCaGCCCA- -5' |
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18511 | 5' | -59.4 | NC_004681.1 | + | 67343 | 0.71 | 0.279328 |
Target: 5'- cGCAGGGCcuggugaagaagucgGGCGCCUgguUCAAGUaCGGGg -3' miRNA: 3'- uCGUCUCG---------------CCGUGGG---AGUUCA-GCCCa -5' |
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18511 | 5' | -59.4 | NC_004681.1 | + | 46710 | 0.66 | 0.545982 |
Target: 5'- uGCGGGGCGGggUCCUCGgcgagugggccGGUCuGGGc -3' miRNA: 3'- uCGUCUCGCCguGGGAGU-----------UCAG-CCCa -5' |
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18511 | 5' | -59.4 | NC_004681.1 | + | 5768 | 0.66 | 0.535706 |
Target: 5'- aAGCGGAuCGGCACgaCCUCGucGUCGGcGa -3' miRNA: 3'- -UCGUCUcGCCGUG--GGAGUu-CAGCC-Ca -5' |
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18511 | 5' | -59.4 | NC_004681.1 | + | 34552 | 0.66 | 0.535706 |
Target: 5'- cGGCAGgucaucgucGGCGGCACCgUCAuc-UGGGa -3' miRNA: 3'- -UCGUC---------UCGCCGUGGgAGUucaGCCCa -5' |
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18511 | 5' | -59.4 | NC_004681.1 | + | 47153 | 0.68 | 0.428336 |
Target: 5'- uGGCGGGGUGcGCGCucgugcacauCCUCGucggGGUCGGGc -3' miRNA: 3'- -UCGUCUCGC-CGUG----------GGAGU----UCAGCCCa -5' |
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18511 | 5' | -59.4 | NC_004681.1 | + | 16142 | 0.7 | 0.349792 |
Target: 5'- cGGCGGAugcggugacagcgGCGGCGCCCUUGccagcAGcCGGGa -3' miRNA: 3'- -UCGUCU-------------CGCCGUGGGAGU-----UCaGCCCa -5' |
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18511 | 5' | -59.4 | NC_004681.1 | + | 8319 | 0.66 | 0.55632 |
Target: 5'- cGGCcuGGUGG-GCCUUgAAGUCGGGUu -3' miRNA: 3'- -UCGucUCGCCgUGGGAgUUCAGCCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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