miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18512 3' -59 NC_004681.1 + 27316 0.66 0.557676
Target:  5'- -aCGGCCAGGAGgggcGCGaCGCCGGu -3'
miRNA:   3'- uaGCCGGUCCUCgagaUGCaGCGGUU- -5'
18512 3' -59 NC_004681.1 + 27631 0.66 0.557676
Target:  5'- -gCGGCgGcGGcGGCUCUG-GUCGCCGAu -3'
miRNA:   3'- uaGCCGgU-CC-UCGAGAUgCAGCGGUU- -5'
18512 3' -59 NC_004681.1 + 24976 0.66 0.547176
Target:  5'- -cCGGCgaCGGGGGCUCUggcggcacagGCGUCGgCGg -3'
miRNA:   3'- uaGCCG--GUCCUCGAGA----------UGCAGCgGUu -5'
18512 3' -59 NC_004681.1 + 4504 0.66 0.526374
Target:  5'- uUUGGCUAGGgcAGaCUCUGgaauccagUGUCGCCAAa -3'
miRNA:   3'- uAGCCGGUCC--UC-GAGAU--------GCAGCGGUU- -5'
18512 3' -59 NC_004681.1 + 39571 0.66 0.516084
Target:  5'- -gCGGCCgAGGAGCUCgcaucggACGaauUCGaCCGAc -3'
miRNA:   3'- uaGCCGG-UCCUCGAGa------UGC---AGC-GGUU- -5'
18512 3' -59 NC_004681.1 + 18897 0.66 0.516084
Target:  5'- -cCGGUCAGGuGUUCUACcUgGCCGGu -3'
miRNA:   3'- uaGCCGGUCCuCGAGAUGcAgCGGUU- -5'
18512 3' -59 NC_004681.1 + 5515 0.67 0.495755
Target:  5'- gGUCGGCCAGcAGUUUcGCGUaGCCGGu -3'
miRNA:   3'- -UAGCCGGUCcUCGAGaUGCAgCGGUU- -5'
18512 3' -59 NC_004681.1 + 48120 0.67 0.456247
Target:  5'- --aGGCgGGGGGCUCaaccaucugcACGUCGCUAAu -3'
miRNA:   3'- uagCCGgUCCUCGAGa---------UGCAGCGGUU- -5'
18512 3' -59 NC_004681.1 + 9340 0.68 0.418496
Target:  5'- cGUCaGGCgCAGGAGCUCccaGUCGCgCGGg -3'
miRNA:   3'- -UAG-CCG-GUCCUCGAGaugCAGCG-GUU- -5'
18512 3' -59 NC_004681.1 + 15382 0.7 0.340923
Target:  5'- -aUGGCCGGGAGgaUgACGUUGCCGu -3'
miRNA:   3'- uaGCCGGUCCUCgaGaUGCAGCGGUu -5'
18512 3' -59 NC_004681.1 + 9055 0.71 0.274299
Target:  5'- cGUCGGCCAGGAcaCUgUcGCGUCGCUGAa -3'
miRNA:   3'- -UAGCCGGUCCUc-GAgA-UGCAGCGGUU- -5'
18512 3' -59 NC_004681.1 + 30054 0.71 0.267577
Target:  5'- cAUCGGCCucGGAGCUCccGCuGUCGCgCAGg -3'
miRNA:   3'- -UAGCCGGu-CCUCGAGa-UG-CAGCG-GUU- -5'
18512 3' -59 NC_004681.1 + 61775 1.04 0.001216
Target:  5'- cAUCGGCCAGGAGCUCUACGUCGCCAAu -3'
miRNA:   3'- -UAGCCGGUCCUCGAGAUGCAGCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.